Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03283 ATGAAGAGCATAAACGACGACGGTTCGACGCAAGATCTCGACCCTCAGAGCGACCACAGCTCCGATTACTTAACTAACCCAAACTCTAACCCCCAACCTCACCCTCACCCGCGCCGTCCGCGGGGTTTCGCGGCGGCGGCGGCCGCGGCGGTCACTACCAATTCCGTTGCCAAAGGAAAGAAGGAGAGAGAGAAGGAGAAGGAGCGAACCAAGCTCCGGGAGCGACACCGCCGGGCCATCACCAGTCGCATGCTCGCCGGCCTCCGCCAGTATGGCAATTTCCCCCTGCCCGCGCGTGCAGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGTTGGGTTGTTGACGCCGATGGAACCACCTATCGCCAGTGTCCCCCTCCCTCTCACATGGGGTCATTTGCGGCTAAATCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGGAATTGTTCTGTTAAGGAAACGATTGAGAATCAGACGTCTGTGCTTAGAATTGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAACGAGAAATATACAAATGCGAGCCCCATCAATACTGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGATATTCATTCTGGGGTGCACGAAAATGATTTTACTGGCACACCATATGTTCCTGTTTACGTAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCTGAAGGCATTAGGCAGGAGCTTATGCATATGAAGTCTTTAAATGTAGATGGTGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCCCACAGAAATATGTGTGGTCTGGCTATAGGGAACTTTTTAACATCGTTAGAAAATTCAAACTTAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTTTGGATATTGGAAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACTGAATGCCTTTCTTGGGGGATAGACAAAGAACGAGTTCTCAAAGGAAGAACTGGGATTGAGGTCTATTTCGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTTGAAGTTGGACTTGGAGCATCCGGAGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGGTATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGGAGAGCAGCCAAGTTACGTGGTCATTCTTTCTGGGCTAGAGGACCTGATAATGCTGGACATTACAATTCTATGCCGCATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAATTACTATGGACGATTCTTCTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCTTTCGAGGAGACAAAAATAATTGTCAAGGTTCCTGCTGTATACTGGTGGTACAAGACTCCTAGTCATGCGGCAGAGTTGACAGCAGGATATCACAACCCAACAAATCAGGATGGGTACTTTCCTGTGTTTGAGGTTTTAAGAAAACATGATGTCACTATGAAATTCGTCTGCTTAGGGTTTCATCTTTCCAGCCAGGAAGCTAACGAATCATTGATTGATCCTGAGGGGCTGAGTTGGCAGGTGTTAAACTCAGCTTGGGATCGTGGGTTAATGGCTGGTGGAGAGAATGCACTCCTTTGCTACGATAGAGAAGGGTACAAAAGATTGGTTGACACGGCAAAGCCGAGAAATGATCCTGATCATCGACATTTTTCATTCTTTGTTTACCAGCAACCATCTTTGCTGCAGGCTAATGTTTGCTTGTCCGATTTGGATTTCTTCGTTAAATGCATGCATGGTAAGGACCCCTGGAATTTACTCTGTTCTATGTGA 1995 0.4637 MKSINDDGSTQDLDPQSDHSSDYLTNPNSNPQPHPHPRRPRGFAAAAAAAVTTNSVAKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPPPSHMGSFAAKSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQDIHSGVHENDFTGTPYVPVYVKLPAGIINKFCQLIDPEGIRQELMHMKSLNVDGVVVDCWWGIVEGWSPQKYVWSGYRELFNIVRKFKLKLQVVMAFHECGGNDSSDALISLPQWVLDIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYFPVFEVLRKHDVTMKFVCLGFHLSSQEANESLIDPEGLSWQVLNSAWDRGLMAGGENALLCYDREGYKRLVDTAKPRNDPDHRHFSFFVYQQPSLLQANVCLSDLDFFVKCMHGKDPWNLLCSM 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03283 664 MobiDBLite consensus disorder prediction 1 74 - -
Vimu7g03283 664 Pfam Glycosyl hydrolase family 14 246 620 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 SUPERFAMILY (Trans)glycosidases 222 654 IPR017853 -
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 262 276 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 283 301 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 505 521 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 305 326 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 471 490 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 540 563 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 398 420 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 522 533 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 578 600 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 MobiDBLite consensus disorder prediction 1 29 - -
Vimu7g03283 664 Pfam BES1/BZR1 plant transcription factor, N-terminal 58 204 IPR008540 -
Vimu7g03283 664 Gene3D Glycosidases 218 660 - -
Vimu7g03283 664 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 161 655 IPR001554 GO:0000272|GO:0016161
Vimu7g03283 664 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03283 Vimu-Chr7 27885646 27891439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03283 12 654 Glycoside Hydrolase AT5G45300 67.463 0.0 894
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Vimu7g03283 Glyco_hydro_14 1.9e-87 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03283 K01177 - gmx:100777004 1229.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03283 7 27885646 27891439 Vimu7g03283 7 27885646 27891439 ECH