Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03277 ATGAAGCATTTTTTTCTTCTGTTACTTGTTCAACTGTTTTCTGTCTTTACATTAAGCTCACTGTGTTTTATCCCAACTGTAACTGCCTTTGCATCAGGAAATGAGACTGATCATTTGGCTCTGCTGGAATTCAAGAAATCTATATCAAGAGACCCATATGGAATCTTACTTTCTTGGAATACTTCTACTCACTTTTGTGACTGGCCTGGAATAACATGCAATCTCAAGCTTCAAAGAGTTACACAGTTAATTTTGTTAAGGTACAAGTTGGAGGGATCCATATCTCCCCACATAGGAAATCTCTCTTATATGATCAATTTCAATCTAGCAATCAACAACATCCATGGCAAAATACCACAGGAACTGGGAAGGTTGTCACGTCTGCAACAACTATATCTCGGAAACAACTTATTGGTAGGAGAAATTCCTACAAACTTGACTGGATGTAATGATCTCAGATTTTTATACTTGCAGAGAAATAATCTTACTGGCAGAATACCTATCGAGATTGGCTCACTTCAAAAGCTTGAATCTTGGGCTATTTCTACTAACAAGTTAACAGGAGAACTCCCTTTATTCATAGGTAATCTTACATCCCTCACAGATATCGATGTTGATGGTAACAACTTTGAAGGACATATACCACAGGAAATATGCCATCTCAAAAACTTGACATTTGCATCATTTGGTGAAAACAAATTCACTGGAACATTTCCTTCTTGTCTCTATAATATGTCAGCTCTTACCATGATCTCAGCTACAGGAAATCAATTAAGTGGCTCTCTTCCACCTAACATGTTTCACACCCTCCCAAATCTTCAAGAATTTTACATTGGTGACAATCAAATCACTGGTCGAATCCCACCTTCCATCACCAATGCATCCGCATTCTTTTTAGCACTTGAGGCCAGTCGAAACGGTCTCACTGGACAAATTCCAAGCATGGGGAAGTTCCAATATCTTGATATCGTATCTCTGTCTTGGAACCATCTAGGTGACAATTCAACTACTGATTTCGATTTTCTTGAATCATTGGCTAACAGTAGTAAGTTGAAACTTCTGTCCATATCCTACAATAATTTTGGAGGTCATTTGCCAAACTCTTTGGGAAATTTATCCCCCCAGCTTGATAGATTATTTCTTGGAGGTAATCAGATATCAGGGAAAATCCCTGCAACAATAGGAAATTTGACTAACTTAACTTTTTTGGCTATGGAGGACAACAATCTCGGTGGGAATATCCCAACAACTTTTGTGAAGTTTCAAAAAATGCAGAGGTTAAATTTAGGTTCAAACAAGCTGTCAGGAGAGTTAGGAGCCCACATAGGCAACCTTACTCAATTGTTTAATTTGAAATTAGAAGATAATTTGTTTGAAGGGAACATTCCTCCAAGTATAGGAAACTGTCAGAAGTTACAGTACTTGGACATTTCACGTAACAACCTTACAGGAACCATACCCTTGGACCTTTTGAAGCTTTCATCTCTAACCATCTTGTTGAATTTGTCACTAAACTCATTAAGTGGCAGTATACCTGAAGAAGTAGGTAGCCTAACAAATCTTGGCTGGCTAGATATGTCTGAGAATCACATGTCCGGAGAAATTCCTCCAACAATGGGAGAATGCATAATGTTGGAATACCTATATTTGCAAGGGAATTCTTTACAAGGAACCATACCATCTTCCTTGGCATCACTCAAAGGGCTTCAACATTTAGACCTGTCACGAAATCAATTTTCTGGATCGATTCCTAATGATCTACAAAATATTTCTTCCTTAAAATATTTCAATGTATCCTTCAACACATTAGAGGGTGAAGTACCAACCAAAGGTGTCTTTGGAAATGTAAGTGCCATACTGGTTATGGGAAATAATAAACTTTGTGGGGGAACTTCAGAACTGCATCTACCACCATGTCCTGTCAAAGGTAAGAAACTTGCAAAACACCACAAGTTCAGGTTGATAGCAGTGATAGTTAGTGTGATTGCTTTTCTTCTCATATTGTCAATTACTCTAACTATTTACTGGACAAGGAAAAGGAGTAATAAAACATCTTTGGATTCACATTCATCAGAAACTGATCATCAGTTGGCTACAGTTTCGTTCCAAAGCCTGCACAATGCAACTGATGGATTCTCAGCTACAAACTTGATAGGGTCTGGAAATTTTAGCTCTGTTTACAAAGGAACTCTTGAGGAGTTAGAAGAAAAAGTTGTTGCCATAAAGGTCCTAGACCTTCAGAGAAAGGGAGCTCACAAGAGTTTTGTTTCAGAATGCAACGCTCTCAGAAATATCAAACATCGAAATCTGATTCAGGTTTTGACATGTTGTTCCAGCATAGATTACAATGGTCAAGAATTCAAAGCTCTAATTTTTCCGTACATGACAAATGGAAGCTTAGAGCAATGGCTGCATCCCAAGACACCAAGTGCAGAGCAAAAGAGAAAATTGAGCCTTGATCAAAGATTAAATATCATGGTGGATGTTGCTTCTGCATTACATTATCTTCATCATGAATGTGAGCAACCAATAATTCACTGTGATTTAAAGCCAAGTAATGTCCTCCTCGACAATGAGATGGTTCCTCGTGTGAGTGATTTTGGCATAGCAAAACTTCTCTCAACCATCAATGATACCACTTCTAAACAAACAAGTACAATTGGAATAAAGGGAACTCTTGGCTATATTCCTCCAGAGTATGGAGTGAGCTCTGAAGTATCAACTTACGGTGACATATACAGCTTTGGGATTCTTGTGCTGGAAATGCTTACAGGAAAAAGTCCCACAGATGAAATGTTTGAAGATGGTCAAAATCTTCATAACTTTGTTACAGTTTCATTTCCTGATAATCTTTTGCAAATTTTGGATCCACTACTTGTTCCAACAGAGGAAGCAGCACCATTGAAAGGAAACAATTGGAATCTTGATCCAAATGTTGAGATGTGCTTAGTTTCCCTTTTCAGGATTGGGATTTCTTGCTCTATGAAATCACCAAAAGATAGAATGAATATTGCTGATGTCACTAGGGAGCTTAACCGAATCAGTGTGGAAACATCAAAGTAA 3063 0.3794 MKHFFLLLLVQLFSVFTLSSLCFIPTVTAFASGNETDHLALLEFKKSISRDPYGILLSWNTSTHFCDWPGITCNLKLQRVTQLILLRYKLEGSISPHIGNLSYMINFNLAINNIHGKIPQELGRLSRLQQLYLGNNLLVGEIPTNLTGCNDLRFLYLQRNNLTGRIPIEIGSLQKLESWAISTNKLTGELPLFIGNLTSLTDIDVDGNNFEGHIPQEICHLKNLTFASFGENKFTGTFPSCLYNMSALTMISATGNQLSGSLPPNMFHTLPNLQEFYIGDNQITGRIPPSITNASAFFLALEASRNGLTGQIPSMGKFQYLDIVSLSWNHLGDNSTTDFDFLESLANSSKLKLLSISYNNFGGHLPNSLGNLSPQLDRLFLGGNQISGKIPATIGNLTNLTFLAMEDNNLGGNIPTTFVKFQKMQRLNLGSNKLSGELGAHIGNLTQLFNLKLEDNLFEGNIPPSIGNCQKLQYLDISRNNLTGTIPLDLLKLSSLTILLNLSLNSLSGSIPEEVGSLTNLGWLDMSENHMSGEIPPTMGECIMLEYLYLQGNSLQGTIPSSLASLKGLQHLDLSRNQFSGSIPNDLQNISSLKYFNVSFNTLEGEVPTKGVFGNVSAILVMGNNKLCGGTSELHLPPCPVKGKKLAKHHKFRLIAVIVSVIAFLLILSITLTIYWTRKRSNKTSLDSHSSETDHQLATVSFQSLHNATDGFSATNLIGSGNFSSVYKGTLEELEEKVVAIKVLDLQRKGAHKSFVSECNALRNIKHRNLIQVLTCCSSIDYNGQEFKALIFPYMTNGSLEQWLHPKTPSAEQKRKLSLDQRLNIMVDVASALHYLHHECEQPIIHCDLKPSNVLLDNEMVPRVSDFGIAKLLSTINDTTSKQTSTIGIKGTLGYIPPEYGVSSEVSTYGDIYSFGILVLEMLTGKSPTDEMFEDGQNLHNFVTVSFPDNLLQILDPLLVPTEEAAPLKGNNWNLDPNVEMCLVSLFRIGISCSMKSPKDRMNIADVTRELNRISVETSK 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03277 1020 ProSitePatterns Protein kinases ATP-binding region signature. 718 742 IPR017441 GO:0005524
Vimu7g03277 1020 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Vimu7g03277 1020 Gene3D Phosphorylase Kinase; domain 1 672 794 - -
Vimu7g03277 1020 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 74 339 - -
Vimu7g03277 1020 SMART LRR_typ_2 566 589 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 270 294 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 245 269 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 397 420 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 445 469 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 197 221 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 125 149 IPR003591 -
Vimu7g03277 1020 SMART LRR_typ_2 518 542 IPR003591 -
Vimu7g03277 1020 SMART serkin_6 712 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03277 1020 Gene3D Ribonuclease Inhibitor 330 647 IPR032675 -
Vimu7g03277 1020 Pfam Protein kinase domain 715 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03277 1020 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 795 1020 - -
Vimu7g03277 1020 Pfam Leucine Rich repeat 468 484 IPR001611 GO:0005515
Vimu7g03277 1020 SUPERFAMILY L domain-like 374 629 - -
Vimu7g03277 1020 SUPERFAMILY Protein kinase-like (PK-like) 693 1011 IPR011009 -
Vimu7g03277 1020 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Vimu7g03277 1020 SUPERFAMILY L domain-like 34 331 - -
Vimu7g03277 1020 Gene3D Transferase(Phosphotransferase) domain 1 795 1020 - -
Vimu7g03277 1020 Gene3D Ribonuclease Inhibitor 189 299 IPR032675 -
Vimu7g03277 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 340 645 - -
Vimu7g03277 1020 Pfam Leucine Rich Repeat 350 372 IPR001611 GO:0005515
Vimu7g03277 1020 PANTHER OS04G0122200 PROTEIN 220 1015 - -
Vimu7g03277 1020 Gene3D Ribonuclease Inhibitor 34 188 IPR032675 -
Vimu7g03277 1020 ProSiteProfiles Protein kinase domain profile. 712 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03277 1020 ProSiteProfiles Leucine-rich repeat profile. 471 492 IPR001611 GO:0005515
Vimu7g03277 1020 Pfam Leucine rich repeat 545 603 IPR001611 GO:0005515
Vimu7g03277 1020 FunFam LRR receptor-like serine/threonine-protein kinase EFR 683 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03277 Vimu-Chr7 27822675 27826943 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03277 34 1011 Receptor kinase-like Gene Family AT3G47570 44.523 0.0 802
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu7g03277 Pkinase 2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03277 - - gmx:102664380 1499.18