Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03259 ATGCCACAGAACTGCATAGCACCAAAGCCAGAATACTGTAATAGTCTTAACTCTGTGGAGGGACCTCCAGAGATGACTGAGTCCCATAACTCAACTGTCCTTTCTCATTCCATGCAAACCAATGAACAACAACAACAACCTATTCCAAAACTCATTATGTACCCAATAACTCTGAAGTTTGAGGAACTGGTGTACAAAGTTAAACTAGAGCAGAAAGGAGGATGCTGGGGCAGTACATGGACTTGCCAGGAGAAGACCATACTGAATGGAATTACTGGTGTGGTGTGTCCGGGAGAAATACTAGCTATGCTGGGGCCATCGGGCAGTGGCAAAACCACGCTTCTCACAGCACTTGGAGGCCGGCTCAGCGGCAAACTATCTGGTAAGATCACGTACAACGGGCAACCTTTCTCTGGTGCCATGAAGAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATATCCTCACTTAACTGTCACTGAAACTCTAGTCTTCACTGCACTTCTGAGGCTTCCCAACAGCTTGAGCAGAGATGAAAAGGTTCAACATGTAGAGAGAGTGATCACTGAGCTAGGACTGACTCGTTGCAGGAGCAGCATGATAGGTGGCCCACTTTTTAGAGGAATATCAGGAGGAGAAAAAAAGAGAGTGAGCATAGGCCAAGAAATGCTCATCAACCCAAGCCTCCTGTTGCTGGATGAGCCTACTTCAGGCTTGGATTCCACCACAGCACAAAGAATCCTCAACACAATCAAGCGCCTAGCTAGTGGGGGTAGAACTGTTGTCACCACTATTCACCAACCCTCTAGTAGGCTCTACTATATGTTTGATAAGGTGGTCTTGCTCTCTGAAGGCTGCCCCATCTATTATGGTCCTGCTTCAACTGCCTTAGACTACTTCTCTTCTGTTGGCTTTTCCACATGTGTGACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCAGACTCCAAGCAAGTAACTGAACAAAGTGAAGGACTGGAACAAGAGAGGAAACAGGTGAGAGAATCCCTCATCTCTGCTTATGAAAAGAATATAGCTACGAGGCTGAAAGCTGAGATTTGCAGCATGGAAGTGAACAACCAAAATATCACAAAAGATGCTTGTGCAAGAAATTCGATAAAGCCAGAACAATGGAGCACAAGCTGGTGGCAACAGTTCAAAGTACTATTACAAAGGGGTGTGAAGGAGCGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTTGGTGGACTACTGTGGTGGCATACTCCGGAGTCACACATTGAAGATCGGGTTGCCTTGCTTTTTTTCTTTTCTGTTTTCTGGGGATTCTACCCTCTCTACAATGCTGTTTTCACATTCCCTCAAGAGAGGAGAATGCTGATCAAGGAACGTTCATCAGGAATGTATCGCCTTTCTTCCTACTTTCTTGCCAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACTGCATTTGTTTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTGTGACTTTTATCCTTTCTCTTCTTGTGGTTCTCTACAGTGTTGTTGTCTCTCAAAGCCTTGGCCTAGCATTTGGTGCTATTTTGATGGAGATTAAGCAGGCAACTACTCTAGCTTCTGTGACAACCCTTGTGTTTCTCATTGCTGGAGGGTACTATATACAACAGATTCCTCCATTCATTGTGTGGCTCAAGTACTTAAGCTATAGCTACTACTGTTACAAGCTGCTTTTAGGTGTCCAGTACAATGAAAATGACTACTATGAATGTTCAAAGGGGGAGCTGTGCAAAGTGGCAGATTTTCCTCCTATCAAATCAATGGGCTTGAATCATTTGTGGGTTGATGTGTGCATTATGGCCCTGATGTTGGTGGGTTATCGACTAGTTGCTTATTTTGCACTGCATAGAGTTAGGTAG 1980 0.4495 MPQNCIAPKPEYCNSLNSVEGPPEMTESHNSTVLSHSMQTNEQQQQPIPKLIMYPITLKFEELVYKVKLEQKGGCWGSTWTCQEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGKITYNGQPFSGAMKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLSRDEKVQHVERVITELGLTRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKQVTEQSEGLEQERKQVRESLISAYEKNIATRLKAEICSMEVNNQNITKDACARNSIKPEQWSTSWWQQFKVLLQRGVKERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKGELCKVADFPPIKSMGLNHLWVDVCIMALMLVGYRLVAYFALHRVR 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03259 659 Pfam ABC-2 type transporter 267 392 IPR043926 GO:0140359
Vimu7g03259 659 Pfam ABC-2 type transporter 397 603 IPR013525 GO:0016020|GO:0140359
Vimu7g03259 659 Gene3D - 77 304 IPR027417 -
Vimu7g03259 659 ProSitePatterns ABC transporters family signature. 210 224 IPR017871 GO:0005524|GO:0016887
Vimu7g03259 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 302 IPR027417 -
Vimu7g03259 659 FunFam ABC transporter G family member 22 75 304 - -
Vimu7g03259 659 Pfam ABC transporter 89 238 IPR003439 GO:0005524
Vimu7g03259 659 CDD ABCG_EPDR 55 292 - -
Vimu7g03259 659 SMART AAA_5 97 287 IPR003593 GO:0016887
Vimu7g03259 659 Coils Coil 329 349 - -
Vimu7g03259 659 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 58 310 IPR003439 GO:0005524
Vimu7g03259 659 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 33 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03259 Vimu-Chr7 27586556 27589319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03259 87 286 Calmodulin-binding Proteins AT2G36910 30.332 2.47e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03259 K05681 - gmx:100780191 1253.81