LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g03234	ATGATTCCCCTCCAATGCAACAACATGGGTGGATACTCCGCCGCCATCGCCGTCATCACCACCATCCTCTTCTTGTTCCCGCCGCCGACTTCCCAGGCCCAGATTCTCAACACAGAAGCCCACGTCTTCGGCCCCTTCAACCAATCCTACTTCAACACGTTCGCGGTGTTGCCCAGCGCCGCCATCAACCTTGAAGCGCTCCAAGTAACACCAGACAGCACAGGCAACGTGTCCCTGACCAACCGCTCCGGCAGAATCTTCTTCAACACCCCTTTCACTCTCTGGAACGACCAAGATAGCCTCGACGAAAAGCCCGTCTCTTTCAACACTTCCTTTCTGATAAACGTGTACCGTCCCAAAAACGATACTCCCGGCGAGGGCATAACCTTCTTCATCGCCCCTTCTACCTCCGCCCCCCCTCCCAACAGCTACGGCCAGTTTCTCGGCCTCACGAACGCCTCCAACGATGGCAACCGCACCAACCAAATCCTCGCCGTCGAACTTGACACCGTGAAGCAGGACTTCGACCCCGACGACAACCACCTCGGCCTGGACGTTAACGGCGTGAGGTCCAACGTCACTGTGTCTCTCACTCCCTTGGGGTTCGAGATCGCGCCCAACGTCACGCGCTTCCACGTGCTGTGGGTGGAGTATGACGGTGGCCGGAAGGTGATCGACGTGTACATCGCGGAGCAGCCTGATAAGGATGCGCCCATAGTGCCGAAACCGGCTAAGCCGGTGTTGAGTTCAGCTATCGATCTGAAACAAGTGGTGAACAGGGTTTCTTATTTTGGGTTCTCTGCTTCGACCGGTGACAACGTTGAACTAAACTGCGTGCTGAGGTGGAACATTTCTATTGAAGTTTTTCCCAAAAAAAAGGGGATCGGAAATGCGTTGAAGATTGGGTTGGGGGTCGGAGTGCCTGTGGTGGTTCTTCTTGTAGCGGGTGTCGTAGGGTGGGTTTATTGGTTGTGGAGAAAGCAGAGAGAAAGCGAGACTGAGATTTTGGGAACTCTCAAGAGTTTACCTGGAACTCCCAGAGAATTTAGGTATCAAGAATTGAAGAAAGCCACTAATAATTTCGATGAGAAGCACAAGCTTGGACAAGGTGGATACGGCGTTGTATACAGAGGAACACTTCCGAAAGAGAAGTTGGAAGTAGCCGTCAAAATGTTCTCCAGAGATAAGATGAAAAGCACCGATGATTTCTTGTCAGAACTCACCATCATCAATCGCCTTCGTCACAAAAACCTTGTTCGCTTACTCGATCCGACAGTGGTTCTGTTCTGTCCAGATCATCATCATGGTAGGAGCAAAGCAATAATTGCTAAAATTCTGTCTGACACGTCTTCGCTGGCAACGTTGACCAGCTATGGCGACAGTTGTTGGCGTCCCAACCTAATTCACTCCATCTTTGTGCATTCATGCATTCAACGTGGTTGCACAAAGCCGAAGAACACTACCCGAATCGAAAAAAATGGGGTGTTGCTGTTAGTGTACGATTACATGCCTAATGGAAGCTTGGACAACCACATTTTCCGTGAGGAAGGGAGCAACACTACGGCACTAAGTTGGCCTTTGAGGTACAAGATCATAGCAGGGGTGGCTTCTGCTTTGAACTACCTGCACAACGAGTATGATCAGAAAGTGGTCCACAGAGACCTTAAGGCCAGCAACATCATGCTGGACTCAGACTTCAATGCTCGTTTAGGTGACTTCGGGTTGGCTCGTGCGTTGGAGAATGATAAAACATCGTATGCAGAGTTAGAAGGAGTGCATGGCACAATGGGGTACATTGCACCTGAGTGCTTCCACACTGGGAGGGCCACAAGGGAATCTGATGTTTATGGGTTTGGAGCAGTGGTCCTTGAGGTTGTGTGTGGCCAAAGGCCATGGACCAAGAATGAGGGGTATGAGTGCTTGGTGGATTGGGTATGGCACCTGCATCGTGAGCAAAGGATACTTGATGCAGTGGATCCAAGACTTGGGAATGACTGTGTGGCTGAAGAGGCAGAGAGGCTTCTGAAACTAGGATTAGCTTGCTCTCACCCCATTGCCAGTGAAAGACCAAAGATGCAAACAATTGTTCAGATCATATCTGGTTCAGTTCCTGTGCCTCATGTTCCACCTTTCAAACCATCTTTTGTGTGGCCAGCTATGGATCTATCAAGCCTTGCAAGTGACCTCACACAAACCACAACAACCGAGTACACACCCATGACAACAACCGAGTACACACCCATGAACAGTACCACGCATTCTATGCATGTTGATTTCTCAGATAGTGGCTCTCTTGTCTAA	2301	0.5033	MIPLQCNNMGGYSAAIAVITTILFLFPPPTSQAQILNTEAHVFGPFNQSYFNTFAVLPSAAINLEALQVTPDSTGNVSLTNRSGRIFFNTPFTLWNDQDSLDEKPVSFNTSFLINVYRPKNDTPGEGITFFIAPSTSAPPPNSYGQFLGLTNASNDGNRTNQILAVELDTVKQDFDPDDNHLGLDVNGVRSNVTVSLTPLGFEIAPNVTRFHVLWVEYDGGRKVIDVYIAEQPDKDAPIVPKPAKPVLSSAIDLKQVVNRVSYFGFSASTGDNVELNCVLRWNISIEVFPKKKGIGNALKIGLGVGVPVVVLLVAGVVGWVYWLWRKQRESETEILGTLKSLPGTPREFRYQELKKATNNFDEKHKLGQGGYGVVYRGTLPKEKLEVAVKMFSRDKMKSTDDFLSELTIINRLRHKNLVRLLDPTVVLFCPDHHHGRSKAIIAKILSDTSSLATLTSYGDSCWRPNLIHSIFVHSCIQRGCTKPKNTTRIEKNGVLLLVYDYMPNGSLDNHIFREEGSNTTALSWPLRYKIIAGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARALENDKTSYAELEGVHGTMGYIAPECFHTGRATRESDVYGFGAVVLEVVCGQRPWTKNEGYECLVDWVWHLHREQRILDAVDPRLGNDCVAEEAERLLKLGLACSHPIASERPKMQTIVQIISGSVPVPHVPPFKPSFVWPAMDLSSLASDLTQTTTTEYTPMTTTEYTPMNSTTHSMHVDFSDSGSLV	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g03234	766	ProSitePatterns	Legume lectins beta-chain signature.	164	170	IPR019825	-
	Vimu7g03234	766	ProSitePatterns	Protein kinases ATP-binding region signature.	367	390	IPR017441	GO:0005524
	Vimu7g03234	766	SMART	serkin_6	361	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03234	766	PANTHER	-	74	709	-	-
	Vimu7g03234	766	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	550	562	IPR008271	GO:0004672\|GO:0006468
	Vimu7g03234	766	Pfam	Protein kinase domain	491	697	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03234	766	Pfam	Protein kinase domain	362	423	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03234	766	SUPERFAMILY	Protein kinase-like (PK-like)	343	730	IPR011009	-
	Vimu7g03234	766	Gene3D	Transferase(Phosphotransferase) domain 1	503	703	-	-
	Vimu7g03234	766	FunFam	probable L-type lectin-domain containing receptor kinase S.5	503	704	-	-
	Vimu7g03234	766	CDD	lectin_legume_LecRK_Arcelin_ConA	51	283	IPR001220	GO:0030246
	Vimu7g03234	766	ProSiteProfiles	Protein kinase domain profile.	361	708	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu7g03234	766	Gene3D	Phosphorylase Kinase; domain 1	346	437	-	-
	Vimu7g03234	766	Pfam	Legume lectin domain	53	288	IPR001220	GO:0030246
	Vimu7g03234	766	Gene3D	-	39	296	-	-
	Vimu7g03234	766	SUPERFAMILY	Concanavalin A-like lectins/glucanases	50	291	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g03234	Vimu-Chr7	27417789	27420666	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g03234	107	738	Receptor kinase-like Gene Family	AT3G59700	33.133	5.98e-95	308

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu7g03234		Lectin_legB	1.5e-55	CL0004

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g03234	-		-	gmx:100784558	655.595