Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03219 ATGAGTGATGCAAAAGAACACGAAGAGGCTGCCCAGGGCGAGCCCTCTGTCGTGGAAGAGAACAAGGTGTTGGTTGATACAAAGGATAGAGTTCAGCCTGAAGATGCCTCTGCTGCTGTTCCAGAAGAGGAAGCGTCAAACGTTGTTGAAAATGGGTCAAATCATGTTGAAAGTGAGTCAAATCCTGCTGAAAATAAGAAGGAAGAGCCATCCGCTGCCGAGCATAAAAATGTGGAACCTGAGGTTGTTTCAGAAGGAATTCCACAAGAGGATGTCCAAAATACTCTTCACTCTGTCCCAGTAGAGGCTCATACTCAGGTTTTGGAGACGACTGAATGTGAAGAAGCGTCTAAAGCGAAGGGGGAAGCTGAAAATTTTCCCACAAGTGATAAGAAGGTTGAGAATAGTGATGATATTCGTCAGAATAGTATTCATGATGTTGGAATGGCTGTGGAAGTGAAGCCTGAAGGCTGTGGAGTGATTGACAGTAAAACTTCCGACAATGGTGATCCAATGCCTGCAAGTCATAATGAACCTGCTATATCACAATCTGCTCCTGCTGATACAAACACTGAATTTGTGAATGTATTAGAAGTTAAGAATAAGGCTGATGAAAAGCAAGCTATCGATCCTGCTGATAATGGGAATTCAAACTCAAAGCACTTGTTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACCGAGGAAGAGCAGTCAGCATTCACGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACATCCCAAGTTTTATGGAGAAGGACTAAATTGCCTCAAGTTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAAGGTGACTTCATGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCGAAGACATGCACCACTGTCTCATGGACTTTCCGGGGATTTTATGAGAAGGCACTTCTTGATTATGAAAGGCATAAAATAAAAGGTGGTGAGCTAAATGTGCCGATTTCTTCTCACCCAGAGCCAATAAATATTGAAAATCAGGCTTCAGCATCAGGTAGAGCCCGAAGAGATGCTGCAGCACGGGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGGAATGGTGAAGTTAGTGACCCTATTATTAAGGATAGGAATTCCATGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTGCACAAACGTAAAAAGCCATCTTCACCTTACATGGATAGTGCAGTCAAAGCTGCACGCAGTAAACCTTCTAAACCCCAGTTAAGACCGTTTCTTTACTTAAATTTAGGAAGTGTTTACTTTGGGACTTTGGTTTATCTGCTGACTTGCTCACCTTTGTTGATTTGTGTGGCTGCTAGATTGGACACAACTGTGATTGATATAGGACCTCCTGCTGACTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTCTGCGGGAAGAGGTTCGTGTACAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTGACACCTTTCAGAAAGGTCGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACATCGGCAGTGGTGACGCTGCATGGGCAGTTGTTTGTTCGTGTACCATTTGAACAGTCGGAATAG 1707 0.4411 MSDAKEHEEAAQGEPSVVEENKVLVDTKDRVQPEDASAAVPEEEASNVVENGSNHVESESNPAENKKEEPSAAEHKNVEPEVVSEGIPQEDVQNTLHSVPVEAHTQVLETTECEEASKAKGEAENFPTSDKKVENSDDIRQNSIHDVGMAVEVKPEGCGVIDSKTSDNGDPMPASHNEPAISQSAPADTNTEFVNVLEVKNKADEKQAIDPADNGNSNSKHLFFLDADHSYDGNESGTEEEQSAFTKELENFFRERSMEFKHPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPISSHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNSMSVQKREKQLKSINLHKRKKPSSPYMDSAVKAARSKPSKPQLRPFLYLNLGSVYFGTLVYLLTCSPLLICVAARLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFRKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03219 568 MobiDBLite consensus disorder prediction 1 37 - -
Vimu7g03219 568 MobiDBLite consensus disorder prediction 166 185 - -
Vimu7g03219 568 CDD ACD_sHsps-like 483 563 - -
Vimu7g03219 568 FunFam AT-rich interactive domain-containing protein 3 239 338 - -
Vimu7g03219 568 ProSiteProfiles ARID domain profile. 239 330 IPR001606 GO:0003677
Vimu7g03219 568 MobiDBLite consensus disorder prediction 1 86 - -
Vimu7g03219 568 Pfam ARID/BRIGHT DNA binding domain 242 326 IPR001606 GO:0003677
Vimu7g03219 568 FunFam AT-rich interactive domain-containing protein 3 462 568 - -
Vimu7g03219 568 SMART bright_3 240 331 IPR001606 GO:0003677
Vimu7g03219 568 CDD ARID 241 326 - -
Vimu7g03219 568 SUPERFAMILY HSP20-like chaperones 477 564 IPR008978 -
Vimu7g03219 568 Gene3D - 239 336 IPR036431 GO:0003677
Vimu7g03219 568 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 468 568 IPR002068 -
Vimu7g03219 568 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 11 567 IPR045147 GO:0006357
Vimu7g03219 568 Pfam Hsp20/alpha crystallin family 485 567 IPR002068 -
Vimu7g03219 568 MobiDBLite consensus disorder prediction 168 185 - -
Vimu7g03219 568 SMART ARID_2 236 326 - -
Vimu7g03219 568 MobiDBLite consensus disorder prediction 111 134 - -
Vimu7g03219 568 MobiDBLite consensus disorder prediction 60 81 - -
Vimu7g03219 568 Gene3D - 475 568 IPR008978 -
Vimu7g03219 568 SUPERFAMILY ARID-like 234 342 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03219 Vimu-Chr7 27282616 27289197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03219 223 566 ARID Transcription Factor Family AT1G76510 56.447 2.98e-124 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vimu7g03219 HSP20 2.8e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03219 - - gmx:100791081 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03219 7 27282616 27289197 Vimu7g03219 7 27282616 27289197 ECH
Vimu7g03219 7 27282616 27289197 Vimu7g03219 7 27282616 27289197 PCT