Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03205 ACCTACCTCAATTATTTAACCACCCCAATTCCTCACCAAACCCAAAACCCAAAACTTCACTCTCTCTCTCTCTTTCTCTCTCACTCTTATTCTTTCAATTCAGTAACTTTCTTCTTAATGACGCGCATGCTCAGAATTCTCAAATCTGCCGACAACGCCACGCCGGTGGCAGCGGCGGCTCCGCCGCCGGAGGCGGTTGCCCTGGAGTCCGATTTCGTGGTGATTCTGGCGGCTCTTCTATGCGCTTTAATTTGCGTGGTGGGACTAGTAGCTGTGGCGCGGTGCGCGTGGCTAAGGCGAGGGCCGGGCGGAGGAAACTCGCCGCGGCAAGCGGTGGTGAACAAGGGCTTAAAGAAGAAGGTGCTGCAGTCGCTGCCGAGGTTCGCGTACGTGGACAGCAACCCGAGCAAGTGGGTGGCCACGACGGAATGCGCGATTTGCCTCGGTGATTTCACCCCCGGCGACGAGATTCGTGTTCTTCCGCAGTGCGGCCACGGCTTCCACGTGTCCTGCATCGACAGGTGGCTGGGGTCCCACTCCTCCTGCCCTTCCTGCCGCCAGGTCCTCGCCGTCGCCAGGTGTCAGAAGTGCGGCCGCTTTCCGGCCACCGCCTCGAGAAGCGGCGCCAGCGAGCCCGAATTGAAGTCCAGAGAAGACAGCAATGCTGCTTCGATAAGTTATTGCAATAATAACAACGGTGATGGCGGTGGAAGTGGTAATAACGCGAATCATCACCATAGCCACCACTCTGACAGTGGGTTCTTGCCTTGA 771 0.5746 TYLNYLTTPIPHQTQNPKLHSLSLFLSHSYSFNSVTFFLMTRMLRILKSADNATPVAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGPGGGNSPRQAVVNKGLKKKVLQSLPRFAYVDSNPSKWVATTECAICLGDFTPGDEIRVLPQCGHGFHVSCIDRWLGSHSSCPSCRQVLAVARCQKCGRFPATASRSGASEPELKSREDSNAASISYCNNNNGDGGGSGNNANHHHSHHSDSGFLP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03205 256 MobiDBLite consensus disorder prediction 219 243 - -
Vimu7g03205 256 Pfam Ring finger domain 143 186 IPR001841 -
Vimu7g03205 256 CDD RING-H2_EL5-like 143 186 - -
Vimu7g03205 256 SMART ring_2 144 185 IPR001841 -
Vimu7g03205 256 MobiDBLite consensus disorder prediction 202 256 - -
Vimu7g03205 256 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 60 198 - -
Vimu7g03205 256 SUPERFAMILY RING/U-box 123 191 - -
Vimu7g03205 256 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Vimu7g03205 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 191 IPR013083 -
Vimu7g03205 256 SMART FANCL_C_2 140 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03205 Vimu-Chr7 27119813 27121513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03205 40 219 C3H Transcription Factor Family AT1G76410 56.150 5.40e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03205 - - vun:114170353 398.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03205 7 27119813 27121513 Vimu7g03205 7 27119813 27121513 ECH
Vimu7g03205 7 27119813 27121513 Vimu10g01788 10 25233854 25235807 ECH
Vimu7g03205 7 27119813 27121513 Vimu7g03205 7 27119813 27121513 PCT