Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03200 ATGATTGCTTCCGTTCTAAGCTCTCCGTTTTCCCTATTTCTTCTCATTTTTCTCTTCTTCAGCTTTCCCACCTCACAATCCCAACTCTTGCTGCCTTCTTCTCCGCCCTCAGTTAAACCGGCCACCGCACTCGTCGCCGCCCTGGATGGTACCGTGTATTTGTTGGATAGTGATTCTGGAAGGGTTTTTTGGTCTTTTTCAACTGGATCTCCAATCTACTATTCATATCATGCTCCCATCAATAACCCTAACCACAACTTCACCGCCTTCGTTGAATGTGGAGATGATTGGGAATTAATCCTCCACGACGCTCACTTGGGTAAAAAGAGACTATCGAAATCGATTGAAGAGTATGTTGCTTCTACCCCTATCAAGACAAAGGATGGAGCATCTGTATTTGGTCACAAGAGAACCACTATGTATGTAGTTAATGCTAAAACTGGAGGACTATACCGAAGCTACTCTGAACATGATCATGCTTCTAATGCGGTGTCGAGTTTTGATGACCGGCTGCATGTTGCAAGTACGAATGATAATGTTCTTGTTGATCCTGCACAGTTGAATCCACCTGAGTACTTGCTTGAGATAACTAGGACGGATTATACTTTGCAATCCGTTGTTCCTGGTTCTGGAATAGTTTTGTGGACTATGAAAGTGGCTGAATTTAAGGCTGCATTGGTTTGTTCACATACTGAAAATCCTTCTGGAAGGAAATCATTAGATGCAGAGGATGGGTATGTTTTGGACGGTGGCTTAGATTTTGCCATGCCCTATGCATGTTGGGACATGAAACTGAATGAAGTATACCGCCAACGCAAGAAATTTTTGATAGAACCTGCTGACCCTGAGAGATTGTCTGAGGTTTATGAAGAGGTTGATATGCTTCCTTTTCATACTTCAGAGCTCATGCTTCCATCACAACCAGCCACTGATAAAATTGTTCTAGGCTGGGAGGGAATGCCGATGCTATCATTGCCTATGCCAAATCCTTTGTCTTCTTTGCAACACAAAATTGGCTTCTATGAGGGCAATGATAATGTTCCTATGCTCCCTCGGTCTCTTATGGAGACCACTACAGAAGAAGTTGATCCAGGCAGGGTGAATAAATGGTCAAAAACAATACCTCTTGTATTATTTACCATCTTTCTTGGTTCTTTTATTATATATCACTCTCTTGTCTTTACCAATAAAGACCAGAACAGGGAGACACATTCAAAAAGTCCACCTCCTAAGAAGAAGAAAGCTCGCAAGTCAATAAAGAACAACATCATTTCTGTCACACAGAATAAGCAATCGTTGTTGGCCCAGGAGGAGGGCACATTCACACTTAACGAAACAAACTCCAGTACACAGGTGCAACTTGATGGACGCAGGATTGGTAAACTATTTGTATCTAGTAAAGAAATTGCCAAGGGAAGCAATGGTACTGTTGTCCTTGAGGGGACATACGAAGGTCGGACAGTTGCTGTCAAACGTCTTGTTCAGAGTCATCATGATGTGGCCCATAAAGAAATCCAAAATCTCATTGCATCTGACAGGCATCCAAACATTGTCCGATGGTATGGGGTGGAATGCGATCATGATTTTGTTTACCTTGCTCTGGAACGCTGTACATGCAACTTGGACGATTTGATTCATTCGCACTCTGATATATCAGAAAATCCAGCAGTTAGAACTTCTCAAATGAAGACAGAGGAGACTGATATGCAGTTTCTTTGGAAAGCAAATGGTTTTCCATCACCTCTCTTACTGAAATTGATGAGGGATATAGTTTCTGGGCTTGTTCATTTGCATGAACTAGGGATAATCCATCGGGATTTGAAACCTCAAAATGTTTTGATAATAAAAGAAAGATTATTGGTTGCAAAGCTTTCTGACATGGGAATTAGCAAACGTCTTCTCGAAGATATGTCTTCTCTAGGTGAAAGTGTTACGGGCTGTGGCAGTTCAGGCTGGCAAGCACCTGAGCAACTTGTTCAAGGGCGACAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTTCTCTTTTTCTGCATGACTGCAGGAAGGCATCCATTTGGAGAGCGGCTTGAGCGTGATGTCAATATTGTTAAAAATCAAAAAGATCTTTTCTTAGTGGAGTTTATTCCTGAAGCTGAGGATCTTATTTCTAGTTTGTTAAACCCTAATCCTGATGTTAGGCCAATGGCGATTGAAGTATTGCATCATCCTCTCTTTTGGAGCTCTGAGATGAGACTTTCATTTTTGCGTGATGTAAGTGATAGGGTGGAACTTGAAGATAGAGAATCCGTTTCTAGTCTTTTGAAGTCATTAGAAAGCATTGCTCCACTGGCATTAGGTGCAAAATGGGATGAGAAGCTAGATCCTGATTTCATCACTAACATTGGTCGATACAGGAGATATAAATTTGACAGTGTGCGGGACCTGTTGAGGGTCATGAGAAATAAGCTAAATCATTACAGGGAACTGCCTCAAGAAATCCAGGAACTGATAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCGAGTCGATTCCCAAGGCTCTTGATTGAAGTGTACAAAGTTATATACAGAAATTGCAAGAACGATGAATGCTTTCAAAGATATTTTAGATACATTAACTAG 2631 0.4151 MIASVLSSPFSLFLLIFLFFSFPTSQSQLLLPSSPPSVKPATALVAALDGTVYLLDSDSGRVFWSFSTGSPIYYSYHAPINNPNHNFTAFVECGDDWELILHDAHLGKKRLSKSIEEYVASTPIKTKDGASVFGHKRTTMYVVNAKTGGLYRSYSEHDHASNAVSSFDDRLHVASTNDNVLVDPAQLNPPEYLLEITRTDYTLQSVVPGSGIVLWTMKVAEFKAALVCSHTENPSGRKSLDAEDGYVLDGGLDFAMPYACWDMKLNEVYRQRKKFLIEPADPERLSEVYEEVDMLPFHTSELMLPSQPATDKIVLGWEGMPMLSLPMPNPLSSLQHKIGFYEGNDNVPMLPRSLMETTTEEVDPGRVNKWSKTIPLVLFTIFLGSFIIYHSLVFTNKDQNRETHSKSPPPKKKKARKSIKNNIISVTQNKQSLLAQEEGTFTLNETNSSTQVQLDGRRIGKLFVSSKEIAKGSNGTVVLEGTYEGRTVAVKRLVQSHHDVAHKEIQNLIASDRHPNIVRWYGVECDHDFVYLALERCTCNLDDLIHSHSDISENPAVRTSQMKTEETDMQFLWKANGFPSPLLLKLMRDIVSGLVHLHELGIIHRDLKPQNVLIIKERLLVAKLSDMGISKRLLEDMSSLGESVTGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNQKDLFLVEFIPEAEDLISSLLNPNPDVRPMAIEVLHHPLFWSSEMRLSFLRDVSDRVELEDRESVSSLLKSLESIAPLALGAKWDEKLDPDFITNIGRYRRYKFDSVRDLLRVMRNKLNHYRELPQEIQELIGPVPEGFNDYFASRFPRLLIEVYKVIYRNCKNDECFQRYFRYIN 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03200 876 SMART serkin_6 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03200 876 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 744 876 - -
Vimu7g03200 876 SMART ire1_9 123 155 IPR018391 -
Vimu7g03200 876 SMART ire1_9 36 67 IPR018391 -
Vimu7g03200 876 Pfam Ribonuclease 2-5A 746 872 IPR010513 GO:0004540|GO:0006397
Vimu7g03200 876 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 455 535 - -
Vimu7g03200 876 Gene3D Transferase(Phosphotransferase) domain 1 562 742 - -
Vimu7g03200 876 MobiDBLite consensus disorder prediction 399 418 - -
Vimu7g03200 876 Pfam Protein kinase domain 465 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03200 876 Gene3D Phosphorylase Kinase; domain 1 448 535 - -
Vimu7g03200 876 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 564 742 - -
Vimu7g03200 876 ProSiteProfiles KEN domain profile. 743 874 IPR010513 GO:0004540|GO:0006397
Vimu7g03200 876 CDD RNase_Ire1 744 872 - -
Vimu7g03200 876 SUPERFAMILY Protein kinase-like (PK-like) 456 764 IPR011009 -
Vimu7g03200 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Vimu7g03200 876 FunFam Inositol requiring 1-1 24 235 - -
Vimu7g03200 876 Gene3D KEN domain 743 875 IPR038357 -
Vimu7g03200 876 SMART PGNneu 805 859 - -
Vimu7g03200 876 Gene3D - 20 274 IPR015943 GO:0005515
Vimu7g03200 876 PANTHER IRE1-RELATED 110 873 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vimu7g03200 876 ProSiteProfiles Protein kinase domain profile. 463 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03200 876 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 33 186 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03200 Vimu-Chr7 27056107 27062844 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03200 388 813 MAP Kinase Kinase Kinase AT1G54960 25.056 4.53e-20 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vimu7g03200 Pkinase 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03200 K08852 - gmx:100785363 1275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03200 7 27056107 27062844 Vimu7g03200 7 27056107 27062844 ECH
Vimu7g03200 7 27056107 27062844 Vimu7g03200 7 27056107 27062844 PCT