Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03199 ATGAGTAAAGTTTGGCCCTTGGTTTTCATGGTTCTCTCCATTGGATGCTTTTCAAACGGGAGTGGCAGGCAAAATTCCACAGTACCGGATCTTGTAAATATTGGGGCTCTCTTCTCTTACAATACCAGTGTTGGTAGAACTATAAAAGTTGCATTAGAAGCTGCTTTTGACGATATAAATTCTGATCCAAATATTCTTGGTAGAACCAAGCTAAACCTCTCACTGCAAGAAGATTCTAAGTACAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGTCAGACAGTGGCGATAATAGGCCCCCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTTCTGTCATTTTCAGCTTTAGACCCTACTCTTTCTTCGCTTCAATTCCCATTCTTCATTAGAACTTGCCATAGTGATCTTTATCAAATGACTGCAATAGCAGACCTTGTTGACTACTATGGCTGGAAAGATGTTATCGCTGTCTTTCCTGATGATGATAATGGGAGAAATGGAATTAGCACATTAGGAGATAAGCTTGCGGAGAGGCGTTGCAAGATATCATATAAAGCAGCTTTGAGGCCCCAAGCATCTATGGAAGAGATTAGTAATGTGCTTGTGCAGGTGGCTCTGGCAGAATCACGGATAATAGTTGTTCATGGCAATACTCAACTTGGCCCCCAGGTGTTCACAGTTGCAAAGAATCTTGGGATGATGGGAACTGGTTATGTCTGGATAGCCACTTCTTTTCTCTCTGCTCTGCTTGATATTAACTATCCTCTCTCTCCCGATTCAATGGATGAAATTCAAGGAGTTCTTACACCACGTATCTACACGCTAAATTCAGAGCGCAGAAGAAGTTTTGTTTCTAGGTGGAAAAACTTGACCAGGGGAAATACTGCCAATGTCAAGCTTGGATTGAGTTTTTTACCTCTCTATGCATATGACACTGTTTATGCACTTGCTCATGCTCTTGATGCATTTTTCAAAGAAGGTAACCAAATTACATTCTCAACTGATTCAAAGCTGTCTAACATACATGGAAACAACTTGAATCTTGAGGCCTTGAAAATCTTTAAAGAAGGAAATCTGTTACGTAGAAAGATCTATGAGGTAAACATGACTGGTGTATCAGGTCCATTCAAGTATACATCCGATAGAAACCTTGCTAATCCTGCATATGAAATCATTAATGTGATTGGAACAGGAACTCGAAGGATCGGTTATTGGTCTAATCACTCTGGTTTATCAGTTGTTCCTCCAGAAACTCTTTATTCCAAACCAGTCAATCTGCCCAGGAAAAATCAACAGCTGTTTCCTGTGATTTGGCCTGGAAACACAGATGAGAAACCTCGTGGTTGGGTTTTTCCAAATAATGGAAGGCTCTTAAAGATTGGAGTACCAAGAGGTGTTAGTTACCACGAGTTTGTCTCACAGATAAAAGGCACTGACATGTTTGAGGGATTCTGCATTGATGTATTTCTTGCTGCAGTGAATCTCTTGCCTTATGCTGTCCCCTACAGGTTCATCTCATACGGGGATGGTAAGAACAATCCTAGTATGACTGAGCTTGTCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCCATTGGGCAGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCTTTTACACCAAAGATGTGGTTTGTGACAGCTTCCTTTTTCATACTAGTAGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCCAAAAAACAAGTAGTTACCGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGTACACTTGGTCGTGTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAATTAACTCAAGTTATACGGCAAGTCTGACCTCAATCCTCACAGTGCAACAACTTTATTCTCCCATTAAAGGCATTGAAAGTCTAGTAAACAGCAAAGTGCCTATAGGCTACACGCAGGGTTCTTTTGCAAAAAACTACTTAGTTCAAGAAATTCATATTGAGGAGTCCAGGCTAGTTCCTCTGACAACACCAGAAGAAATTGCTAAAGCACTGAAAAATGGTCCTGAAAATGGCGGTGTTGCTGCTTACATTGATGAGCGTGCTTACACTGATATCTTCCTCTCCAGCCGTTGTGATTTAAGTGTCGTAGGTCAGGAGTTCACCAGAAATGGTTGGGGATTTGCCTTCCCACGGGACTCGCCATTAGCAGTTGACCTGTCAACTGCCATATTACAAATGATAGATAATGGAGATTTGCAAAGGATCCATGACAAATGGCTTTTGAGTAGTGCTTGCTTATCACAAGGGTCAAAGCTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGGCTCTATGCGATCTGTGGAGTTGCGTGCTTGTTTGCACTCTTCATGTATCTTATACAGATTTTGAGGCAATACCAGAAGCACTACTTAGAGGAACCTGAGTCCATTGGTGATCAAAGCATAGGATCATCATCAAGATCTTCACGTCTCAAGACTTTCCTTTCATTTGCAGATGAGAAAGAAGAGACTGTGAAGAGCCGGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACCGAAGCTCTGTAGGAAGCTCATCGAATAAGGAAATTGCTTCACGCAGAAGTGAATATGTTAATGAACTATTATGA 2814 0.4129 MSKVWPLVFMVLSIGCFSNGSGRQNSTVPDLVNIGALFSYNTSVGRTIKVALEAAFDDINSDPNILGRTKLNLSLQEDSKYRGFLSIAEVLQVMASQTVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMTAIADLVDYYGWKDVIAVFPDDDNGRNGISTLGDKLAERRCKISYKAALRPQASMEEISNVLVQVALAESRIIVVHGNTQLGPQVFTVAKNLGMMGTGYVWIATSFLSALLDINYPLSPDSMDEIQGVLTPRIYTLNSERRRSFVSRWKNLTRGNTANVKLGLSFLPLYAYDTVYALAHALDAFFKEGNQITFSTDSKLSNIHGNNLNLEALKIFKEGNLLRRKIYEVNMTGVSGPFKYTSDRNLANPAYEIINVIGTGTRRIGYWSNHSGLSVVPPETLYSKPVNLPRKNQQLFPVIWPGNTDEKPRGWVFPNNGRLLKIGVPRGVSYHEFVSQIKGTDMFEGFCIDVFLAAVNLLPYAVPYRFISYGDGKNNPSMTELVRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPIGQAESNALAFLAPFTPKMWFVTASFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLYSPIKGIESLVNSKVPIGYTQGSFAKNYLVQEIHIEESRLVPLTTPEEIAKALKNGPENGGVAAYIDERAYTDIFLSSRCDLSVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMIDNGDLQRIHDKWLLSSACLSQGSKLEVERLQLKSFWGLYAICGVACLFALFMYLIQILRQYQKHYLEEPESIGDQSIGSSSRSSRLKTFLSFADEKEETVKSRSKRRKMERISYRSSVGSSSNKEIASRRSEYVNELL 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03199 937 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Vimu7g03199 937 Pfam Bacterial extracellular solute-binding proteins, family 3 527 812 IPR001638 -
Vimu7g03199 937 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Vimu7g03199 937 FunFam Glutamate receptor 709 816 - -
Vimu7g03199 937 Gene3D - 148 425 - -
Vimu7g03199 937 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Vimu7g03199 937 SUPERFAMILY Periplasmic binding protein-like I 28 464 IPR028082 -
Vimu7g03199 937 MobiDBLite consensus disorder prediction 913 927 - -
Vimu7g03199 937 CDD GluR_Plant 472 812 - -
Vimu7g03199 937 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 892 IPR015683 -
Vimu7g03199 937 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Vimu7g03199 937 Gene3D - 50 400 - -
Vimu7g03199 937 MobiDBLite consensus disorder prediction 893 937 - -
Vimu7g03199 937 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Vimu7g03199 937 Gene3D - 584 717 - -
Vimu7g03199 937 Gene3D - 759 819 - -
Vimu7g03199 937 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Vimu7g03199 937 Gene3D - 467 583 - -
Vimu7g03199 937 FunFam Glutamate receptor 583 713 - -
Vimu7g03199 937 PIRSF IGluLR_plant 1 935 IPR017103 -
Vimu7g03199 937 FunFam Glutamate receptor 148 304 - -
Vimu7g03199 937 FunFam Glutamate receptor 467 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03199 Vimu-Chr7 27050956 27054976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03199 5 916 Ion Channels AT3G51480 56.783 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03199 K05387 - gmx:100793320 1578.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03199 7 27050956 27054976 Vimu7g03199 7 27050956 27054976 ECH
Vimu7g03199 7 27050956 27054976 Vimu7g03199 7 27050956 27054976 PCT