Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03198 ATGGCTTCTTTCTCGACGTGTTGCACGTGTGAGGCAGATACAATGAGTGGTGTTGGTGGTGGATGCCCCTGCCCCAGGGGTAACATTGATGGTGCCATGGAGGATCTGAATGGGGATACGGTGGGGAATTTGAATCAGAATGCAGCGAAGCCTCCGAGGGACCATTCTGTTATGCGACATTTCAGCAGCTCTTCTTGGTCTGCAGAGCCGGAATCAAATATTAATATTATTGGACTTAAATCAAGCACAGAAAAAAAATCAGACTTTCCACTTGAAATTCGATCTGGAAGCTATTCCGATAAAGGACCAAAGCAGTACATGGAGGATGAATTCATATGCATTGATACTCTTAGTGAATGTGACGGTCTAGGAGCAAACCTTCCTTCTCCTGCAGCATTTTATGGGGTATTTGATGGACATGGTGGCGTTGATGCAGCAGCATTCACGAGAAAGAACATCCTCAAGTTTATAGTTAAAGATGCTCATTTCCCATGTAGCATTAAGAAAGCAATTAAGAGTGCATTTGTGAAGGCTGATCTTGCTTTTAGAGATGCCAGTTCTCTTGACAACTCTTCGGGCACCACCGCTCTGATAGCCCTTATGTTGGGAAGTTCCATGCTGATTGCCAATGCAGGAGATTCTCGTGCTGTGTTGGGCAAACGGGGCAGAGCAGTTGAACTTTCCAAAGACCATAAACCAAACTGCACTTCTGAAAGATTAAGAATTGAAAAACTTGGTGGAGTCATCTACGATGGATACCTCAACGGCCAACTATCAGTGGCTCGTGCTCTTGGAGATTGGCACATAAAAGGCAGCAAAGGTTCTAAGAGTCCTCTAAGCTCGGAGCCGGAGCTGGAGGAGATTATGCTGACAGAAGAAGATGAGTTTTTGATAATGGGCTGTGATGGATTGTGGGATGTGATGAGCAGCCAGTGTGCTGTGACAATGGTGAGGAGGGAGATGATGCAGCATAATGATCCCAACAAATGTGCAAAAGTACTTGTTACTGAGGCCCTCCAACGCAACACTTGTGACAACCTCACAGTTGTGATTGTGTGTTTCTCCAAAGATCCACCTCCTAAAATTGAAATTCCTAGATCATGTAGGAGGAGGAGTATTTCTGCTGAGGGCCTTGATCTTCTCAAGGGTGTTTTGAATGGTAGATGA 1167 0.4516 MASFSTCCTCEADTMSGVGGGCPCPRGNIDGAMEDLNGDTVGNLNQNAAKPPRDHSVMRHFSSSSWSAEPESNINIIGLKSSTEKKSDFPLEIRSGSYSDKGPKQYMEDEFICIDTLSECDGLGANLPSPAAFYGVFDGHGGVDAAAFTRKNILKFIVKDAHFPCSIKKAIKSAFVKADLAFRDASSLDNSSGTTALIALMLGSSMLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSSEPELEEIMLTEEDEFLIMGCDGLWDVMSSQCAVTMVRREMMQHNDPNKCAKVLVTEALQRNTCDNLTVVIVCFSKDPPPKIEIPRSCRRRSISAEGLDLLKGVLNGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03198 388 Gene3D - 78 358 IPR036457 -
Vimu7g03198 388 SMART PP2C_SIG_2 109 354 IPR001932 -
Vimu7g03198 388 Pfam Protein phosphatase 2C 101 346 IPR001932 -
Vimu7g03198 388 SMART PP2C_4 84 352 IPR001932 -
Vimu7g03198 388 FunFam Probable protein phosphatase 2C 22 79 357 - -
Vimu7g03198 388 PANTHER PROTEIN PHOSPHATASE 2C 81 352 IPR015655 GO:0004722|GO:0006470
Vimu7g03198 388 CDD PP2Cc 93 354 IPR001932 -
Vimu7g03198 388 ProSiteProfiles PPM-type phosphatase domain profile. 94 354 IPR001932 -
Vimu7g03198 388 SUPERFAMILY PP2C-like 89 355 IPR036457 -
Vimu7g03198 388 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03198 Vimu-Chr7 27040823 27043130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03198 77 386 PP2C-type Phosphatase Gene Family AT3G51470 76.774 1.46e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03198 K14803 - gmx:100786416 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03198 7 27040823 27043130 Vimu7g03198 7 27040823 27043130 ECH