Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03178 ATGGGTGTCTGTTTTTCTTCCGCCGGCGACCACCGATCACCCAACTCCACATCCCCTCAAGGTTCAGCGCGTGGGAGTAGGGACTTGACAGTATCCTTGGGGAGCGTGGAAGGAAAGCGTGAAGTTTCGGAGGAGTCTGGGGTTGTCGGAAGCAGCAGTGGTTGTTGGAGTAACAGCAACAACAGCAACAGTGACGCTAACAGTAATAGCATTGTTTTTCCGAGTTTGGAAATGAGGAAGTTGAAAGAGTTTAGTTTCGCGGAGCTGAAAGCAGCTACGAAGGGTTTCAAGTCAGATGCGTTGCTTGGAGAAGGAGGTTTTGGGAAAGTTTACAAAGGATGGTTGCATGAGAAAACTCTGACACCAAGCAAAGCTGGTTCTGGAATCATGGTAGCTATCAAAAAGTTGAATCCCGAAAGTATGCAGGGCCTTCAGGAGTGGCAGTCAGAAATCACGTTTCTGGGAACAGTTTCTCACCCAAACCTGGTGAAGCTTTTGGGTTACTGCTGTGACGATGTGGAGTTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGACTCATCTATTTTGGAGAAATACTAACACAGAACCTTTGTCTTGGGACACTCGACTGAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTACTTGCACACCTCAGATAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATATTACTTGATGAGGAGTTCAACGCGAAAATATCAGATTTTGGTTTGGCGAAACTAGGCCCTTCTGCGGGAGATTCACACGTGACAACTAGAATCATAGGAACATATGGTTATGCTGCTCCAGAATACATTGCAACAGGTCACCTATATGTGAAAAGTGATGTTTATGGATTTGGTGTGGTGCTGCTTGAAATGCTGAAAGGAATGAGAGCACTTGATCAAAAGCGGCCTTCAGGGCAGCAGAATCTGGTTGAATGGATTAAGCCTTATCTGTCTGATAAAAGTAAGTTGAAAAGTGATATTATGGATGAAAAGATTGAAGGTCAGTATTCAACAAATGCAGCACTGAAAGCAGCACAGCTTACTCTAAAATGCCTTGAAACTGACCCTAAACTGCGTCCTTCTATGCAACAAGTTCTTCACACATTGGAAACCATCCAAGCTATCAAACTTAGAAGGAGGAAAAGAACCAAACATTGCTCTAAGTTCGCAACTATCAACAATTTCCAATAG 1221 0.4406 MGVCFSSAGDHRSPNSTSPQGSARGSRDLTVSLGSVEGKREVSEESGVVGSSSGCWSNSNNSNSDANSNSIVFPSLEMRKLKEFSFAELKAATKGFKSDALLGEGGFGKVYKGWLHEKTLTPSKAGSGIMVAIKKLNPESMQGLQEWQSEITFLGTVSHPNLVKLLGYCCDDVEFLLVYEFMPKGSLETHLFWRNTNTEPLSWDTRLKIAIGAARGLAYLHTSDKQIIYRDFKASNILLDEEFNAKISDFGLAKLGPSAGDSHVTTRIIGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLKGMRALDQKRPSGQQNLVEWIKPYLSDKSKLKSDIMDEKIEGQYSTNAALKAAQLTLKCLETDPKLRPSMQQVLHTLETIQAIKLRRRKRTKHCSKFATINNFQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03178 406 FunFam Serine/threonine-protein kinase PBS1 182 397 - -
Vimu7g03178 406 Pfam Protein tyrosine and serine/threonine kinase 99 379 IPR001245 GO:0004672|GO:0006468
Vimu7g03178 406 FunFam Serine/threonine-protein kinase BIK1 61 181 - -
Vimu7g03178 406 Gene3D Phosphorylase Kinase; domain 1 80 181 - -
Vimu7g03178 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 227 239 IPR008271 GO:0004672|GO:0006468
Vimu7g03178 406 PANTHER OS01G0588500 PROTEIN-RELATED 62 383 - -
Vimu7g03178 406 CDD STKc_IRAK 102 382 - -
Vimu7g03178 406 ProSiteProfiles Protein kinase domain profile. 96 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03178 406 MobiDBLite consensus disorder prediction 1 67 - -
Vimu7g03178 406 ProSitePatterns Protein kinases ATP-binding region signature. 102 135 IPR017441 GO:0005524
Vimu7g03178 406 SUPERFAMILY Protein kinase-like (PK-like) 75 384 IPR011009 -
Vimu7g03178 406 MobiDBLite consensus disorder prediction 46 67 - -
Vimu7g03178 406 MobiDBLite consensus disorder prediction 9 29 - -
Vimu7g03178 406 Gene3D Transferase(Phosphotransferase) domain 1 182 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03178 Vimu-Chr7 26927179 26929705 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03178 58 379 Glycoside Hydrolase AT3G07070 47.059 1.33e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g03178 PK_Tyr_Ser-Thr 6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03178 - - gmx:100778116 586.26