Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03177 ATGGGTCTCTGCTTTTCTTCCCGCGCTCCTCGCCAAACACCCTCTAATTCTCTTCACTACTCTGGCAATGTTAATGGAGGAAGCAGTAGCATTAGCAGTATCAGTGGGAACAACGTTGTGTTTCCGAGTGTGGAAACGAGGAACTTGAAGCAGTTCAATTTTGCAGAGCTGAAAGCTGCAACGAAGGGTTTCAGATCTGATACACTGCTTGGAGAAGGGGGTTTTGGGAAAGTTTACAAAGGGTGGTTGCATGAGGAGACACTGACACCAGCCAAAGCTGGATCTGGATTGGTGGTTGCTGTTAAGAAATTGAACTCAGAGAGCGTGCAGGGATTTCGAGAGTGGCAGCAAAAACAGCACTATGTTGTTGTTGAGGCTTTGATTAATGAAACATGGTTCATCGAAAAATTTAGTATACAGTCTGAAATCAATTTTTTAGGAAGAGTTTCTCACCAAAACCTGGTGAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTACTTGTGTACGAGTTCATGCCAAAGGGAAGCTTGGAGAATCATCTCTTTAGAAGAAATACGAGCACAGAACCACTGTCTTGGGACACCAGACTCAAAATAGCTATTGGTGCAGCTAGAGGCTTGGCTTTCTTACACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCAAATATACTACTTGATGAGGATTACAATGCAAAAATTTCAGATTTTGGTTTGGCCAAATTAGGCCCTTCTGGGGGAGTTTCACACGTGACTACCAGGATCATGGGCACGTATGGCTATGCTGCTCCAGAATACATTGCAACAGGACATTTGTATGTGAAGAGTGATGTTTATGGTTTTGGTGTAGTGTTGCTTGAAATTCTTACAGGGTTGCGGGCACTTGATAGAAACCGCCCCTTGGAGAAGCAGAATCTAATTGAATGGGCTAAGCCTTCTCTGTCTGATAAAAGAAAGCTGAAAAGCATAATGGATGAGAGAATAGAGGGTCAGTATTCAACCAAGGCAGCAATGAAAGCAGCACATTTAACTCTAAAATGCCTTCAACGTGACCATAGAAAACGTCCTCCCATGAAAGATGTTCTGGAAACATTGGAACGCATAGAACTTATAAAGGATAGAAGGAAATAA 1146 0.425 MGLCFSSRAPRQTPSNSLHYSGNVNGGSSSISSISGNNVVFPSVETRNLKQFNFAELKAATKGFRSDTLLGEGGFGKVYKGWLHEETLTPAKAGSGLVVAVKKLNSESVQGFREWQQKQHYVVVEALINETWFIEKFSIQSEINFLGRVSHQNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFRRNTSTEPLSWDTRLKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSGGVSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGLRALDRNRPLEKQNLIEWAKPSLSDKRKLKSIMDERIEGQYSTKAAMKAAHLTLKCLQRDHRKRPPMKDVLETLERIELIKDRRK 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03177 381 ProSitePatterns Protein kinases ATP-binding region signature. 70 103 IPR017441 GO:0005524
Vimu7g03177 381 SUPERFAMILY Protein kinase-like (PK-like) 40 372 IPR011009 -
Vimu7g03177 381 CDD STKc_IRAK 70 373 - -
Vimu7g03177 381 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g03177 381 Pfam Protein kinase domain 66 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03177 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vimu7g03177 381 PANTHER OS01G0588500 PROTEIN-RELATED 34 373 - -
Vimu7g03177 381 Gene3D Phosphorylase Kinase; domain 1 122 173 - -
Vimu7g03177 381 Gene3D Phosphorylase Kinase; domain 1 27 121 - -
Vimu7g03177 381 FunFam Serine/threonine-protein kinase PBS1 174 381 - -
Vimu7g03177 381 ProSiteProfiles Protein kinase domain profile. 64 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03177 381 Gene3D Transferase(Phosphotransferase) domain 1 174 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03177 Vimu-Chr7 26915724 26918460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03177 4 370 Glycoside Hydrolase AT3G07070 42.487 4.54e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g03177 Pkinase 3.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03177 - - gmx:100777578 596.66