Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu7g03164 | ATGGATGACCATGAGAACAGATCTAAACCAGTGAACCCCACAAGTTTTCAAGGAGGGATGAATTGTGGGGGAAACAGAAAGGTGGGACAGAACAGAAGGGCGTTGAGCGTGATCAATCAGGATCTGGTGGCGGAAGGGAGACCTTACCCTTGTGTTGTTAACAAGAGAACATTGGCAGAAAAACAAGATGTGTGTGAGAAGAAGCAGGCGGATCCGGTGCATCGGCCAATCACAAGGAGGTTTGCTGCACAGATTGCCAGCACACAGCAAAATCGTGCTGAGAGAACCAAGAGGTCAAACTTGGGAAATTCAAATCCGAATGGATTTGGAGAGGTTATATTTGTTGATGATGAACACAAGCCAACGGATGACCAACCAGTGCCAATGTCTTTAGAGCAGACAGAGCCAGTGCATAATGAATTAGATCAGATGGAGGAAGTTGAGATGGAGGATATAAATGATGAGACAGTTTTGGACATTGATATATGTGACGCAAATAATCCCCTTGCAGTGGTGGATTATATTGAAGATCTTTACGCCTACTACAGAAAAATGGAGGGTTCTAGCTGTGTCTCACCCAATTATATGACACAGCAATTTGACATTAATGAAAGGATGAGGGCTATACTTATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTCCTTACAGTTAATCTCATAGACAGATTTTTGGCAAAGCAGACAGTTGTAAGAAAGAAGCTTCAGTTGGTTGGACTAGTTGCAATGCTTCTGGCATGCAAGTATGAAGAGGTTTCAGTTCCTGTGGTAGGGGATCTAATTCTCATATCAGACAAAGCATACACAAGGAAGGAAGTTCTGGAGATGGAGAAGTTGATGGTCAACACATTGCAGTTTAACATGTCTGTGCCAACAGCATATGTTTTTATGAAAAGATTCCTAAAGGCAGCTCAAGCAGACAGAAAGCTTGAGCTACTGGCTTTCTTCCTAGTAGAGCTATCTCTAGTGGAATATGAGATGCTGAAGTTCCCTCCATCCTTGCTAGCAGCAGCTGCTGTTTATACAGCTCAATGTTCCATTTATGGCTTGAAACAATGGAGTAAAACATGTGAATGGCACTCCAATTACTCAGAAGATCAGCTATTAGAGTGCTCTACATCAATGGTTGATTTTCATCAGAAGGCTGGGAAAGGGAAACTTACTGGGGTACATAGGAAGTACTGTTCATCTAAATTTAACTACACTGCAAAATGTGAACCGGCACGTTTTCTTCTGGAGGACTCGTTGTAG | 1293 | 0.4269 | MDDHENRSKPVNPTSFQGGMNCGGNRKVGQNRRALSVINQDLVAEGRPYPCVVNKRTLAEKQDVCEKKQADPVHRPITRRFAAQIASTQQNRAERTKRSNLGNSNPNGFGEVIFVDDEHKPTDDQPVPMSLEQTEPVHNELDQMEEVEMEDINDETVLDIDICDANNPLAVVDYIEDLYAYYRKMEGSSCVSPNYMTQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLAKQTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFNMSVPTAYVFMKRFLKAAQADRKLELLAFFLVELSLVEYEMLKFPPSLLAAAAVYTAQCSIYGLKQWSKTCEWHSNYSEDQLLECSTSMVDFHQKAGKGKLTGVHRKYCSSKFNYTAKCEPARFLLEDSL | 430 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu7g03164 | 430 | CDD | CYCLIN_AtCycB-like_rpt1 | 155 | 300 | - | - | |
| Vimu7g03164 | 430 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Vimu7g03164 | 430 | SUPERFAMILY | Cyclin-like | 166 | 302 | IPR036915 | - | |
| Vimu7g03164 | 430 | MobiDBLite | consensus disorder prediction | 86 | 108 | - | - | |
| Vimu7g03164 | 430 | MobiDBLite | consensus disorder prediction | 86 | 107 | - | - | |
| Vimu7g03164 | 430 | SMART | cyclin_7 | 212 | 296 | IPR013763 | - | |
| Vimu7g03164 | 430 | SMART | cyclin_7 | 309 | 391 | IPR013763 | - | |
| Vimu7g03164 | 430 | SMART | Cyclin_C_2 | 305 | 422 | IPR004367 | - | |
| Vimu7g03164 | 430 | PIRSF | Cyclin_A_B_D_E | 17 | 430 | IPR046965 | GO:0016538|GO:0044772 | |
| Vimu7g03164 | 430 | ProSitePatterns | Cyclins signature. | 207 | 238 | IPR006671 | - | |
| Vimu7g03164 | 430 | SUPERFAMILY | Cyclin-like | 304 | 422 | IPR036915 | - | |
| Vimu7g03164 | 430 | Pfam | Cyclin, C-terminal domain | 305 | 420 | IPR004367 | - | |
| Vimu7g03164 | 430 | Gene3D | - | 177 | 417 | - | - | |
| Vimu7g03164 | 430 | PANTHER | CYCLINS | 130 | 395 | IPR039361 | - | |
| Vimu7g03164 | 430 | Gene3D | - | 191 | 303 | - | - | |
| Vimu7g03164 | 430 | FunFam | G2/mitotic-specific cyclin-1 | 292 | 417 | - | - | |
| Vimu7g03164 | 430 | Pfam | Cyclin, N-terminal domain | 177 | 303 | IPR006671 | - | |
| Vimu7g03164 | 430 | CDD | CYCLIN_AtCycB-like_rpt2 | 305 | 421 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu7g03164 | Vimu-Chr7 | 26815997 | 26819902 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu7g03164 | 5 | 426 | Core Cell Cycle Gene Families | AT1G20610 | 57.907 | 3.17e-175 | 495 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu7g03164 | K21777 | - | gmx:100798068 | 781.556 |