Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03163 ATGTCAATGGCAACTTCTCCTCACACCGCTCTCTTCCAAAGCCGCACCACCCCTTTCCGCCTCTCCTCCCCTCGCCCCACCTCCTTCAAACCAGCATCAGTCAAATGCGCCACCCAGCTCCACACCCAACCCCCACCCCTCACCCACGCCCAAGATCGCGTCTTCAACTTCGCCGCCGGTCCTGCAACCCTCCCGGAAAAGGTCCTCCTCCGTGCCCAATCCGAGCTTTACAACTGGGGCGGATCCGGCATGAGCGTTATGGAAATGAGCCACCGCGGCAAGGAGTTTCTCTCCATAATCCAAAAGGCTGAATCGGATCTCCGCACCCTCCTCCAGATCCCGCCGGAGTATTCCGTCCTCTTCCTCCAGGGAGGCGCCACAACCCAATTCGCAGCCGTGCCGCTCAACCTCTGCTCCCCTGACGACGCCGTCGACTACATCGTCACTGGCTCCTGGGGCGACAAGGCTGCCAAGGAGGCGCAGAAGTACTGCAAACCCAACGTGATCTGGTCTGGGAAATCCGAAAAGTACACAAAGGTTCCGTCTTTTGGCGATTTGCAGCAGAATCCGGGTTCTAGGTATTTGCATATTTGTGCCAATGAGACCATTCACGGGGTTGAGTACAAGGAGTACCCCGTTCCTCAGAGTGGTGTTTTGGTTGCTGATATGTCATCAAATTTCTGCTCCAAGCCTGTGGATGTGTCAAAGTTCGGTGTTATCTATGCCGGCGTCCAGAAGAATGTGGGGCCCTCTGGTGTGACCATTGTGATCATCAGGAAGGACCTCATTGGGAATGCTCAGGGTCTCACTCCTGTGATGCTGGATTTCAAGATCCACGATGATAACAATTCACTCTACAACACCCCTCCCTGTTACGGGATCTACATGTGTGGGTTGGTGTTTGAGCATTTGTTGGAGCAAGGGGGGTTGGTGGAGGTTGAAAAGAATAATAAGAAGAAGGCTGAGATTCTGTACAGTACAATTGATGAGAGCAAAGGGTTCTATAAGTGCCCTGTTGAGAAGTCTGTGAGGTCATTGATGAATGTGCCATTCACTTTGGAGAAATCAGAGTTGGAGGGTGAGTTCGTCAAGGAGGCTGCTAAGGAGAAGATGGTTCAGCTGAAGGGACACAGGTCAGTGGGAGGAATAAGGGCTTCCATTTACAATGCCATGCCCTTGGCTGGGGTTGAGAAGTTGGTAGCTTTCATGAAGGATTTTCAGGCCAAGCATGCTTGA 1236 0.5283 MSMATSPHTALFQSRTTPFRLSSPRPTSFKPASVKCATQLHTQPPPLTHAQDRVFNFAAGPATLPEKVLLRAQSELYNWGGSGMSVMEMSHRGKEFLSIIQKAESDLRTLLQIPPEYSVLFLQGGATTQFAAVPLNLCSPDDAVDYIVTGSWGDKAAKEAQKYCKPNVIWSGKSEKYTKVPSFGDLQQNPGSRYLHICANETIHGVEYKEYPVPQSGVLVADMSSNFCSKPVDVSKFGVIYAGVQKNVGPSGVTIVIIRKDLIGNAQGLTPVMLDFKIHDDNNSLYNTPPCYGIYMCGLVFEHLLEQGGLVEVEKNNKKKAEILYSTIDESKGFYKCPVEKSVRSLMNVPFTLEKSELEGEFVKEAAKEKMVQLKGHRSVGGIRASIYNAMPLAGVEKLVAFMKDFQAKHA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03163 411 Gene3D - 67 306 IPR015421 GO:0003824
Vimu7g03163 411 CDD PSAT_like 55 407 IPR022278 GO:0004648|GO:0006564
Vimu7g03163 411 MobiDBLite consensus disorder prediction 1 27 - -
Vimu7g03163 411 SUPERFAMILY PLP-dependent transferases 52 408 IPR015424 -
Vimu7g03163 411 PANTHER PHOSPHOSERINE AMINOTRANSFERASE 49 411 IPR022278 GO:0004648|GO:0006564
Vimu7g03163 411 Pfam Aminotransferase class-V 54 399 IPR000192 -
Vimu7g03163 411 PIRSF SerC 48 411 IPR022278 GO:0004648|GO:0006564
Vimu7g03163 411 Hamap Phosphoserine aminotransferase [serC]. 52 410 IPR022278 GO:0004648|GO:0006564
Vimu7g03163 411 FunFam Phosphoserine aminotransferase 66 306 - -
Vimu7g03163 411 NCBIfam phosphoserine transaminase 54 410 IPR022278 GO:0004648|GO:0006564
Vimu7g03163 411 Gene3D Aspartate Aminotransferase, domain 1 307 411 IPR015422 GO:0003824
Vimu7g03163 411 FunFam Phosphoserine aminotransferase 307 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03163 Vimu-Chr7 26791887 26794381 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03163 K00831 - gmx:100779355 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03163 7 26791887 26794381 Vimu11g01011 11 10647004 10651446 PCT
Vimu7g03163 7 26791887 26794381 Vimu7g03163 7 26791887 26794381 PCT