Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03161 ATGTCAACATCAGCACAAACAGGACCATTTCGTTACAGCATATCTCTCATGGGCACTGAGCTCACTACTCATATGCCTGCAGCTATTTTCAGACTCAGCATGAGAGTTTTTTTTCAATTTTTTCCACTTCAACCACGAGGCCCTCCTTTTATACTTATACCGAGCCAAACCTTTTGTCAAGAAGGTCCAGATTTATTGCAGACACTGTTATTGTCACTATTATCACCATTATCGCCGCTGTCATCACTCAGACTCTTCGACACTAACATTGTTGACAGACTAGTAAACATGGTTGCCAATGAAATTCGAGAAATCTTCCACATTGTTGATCATGCTGTTACTTCTTCGGTATCTCAATCCCCAGAAATTCCTCTGTGGATTGTAATCAATGTTACTGATAGTAGCATGCATACAACAACACAATATCCTTTAAGAACGGTTCCAATAGTTGAAAAACCTATTGACACGTTGAAGAAATCTACAGTGTTACAAAATGAGTGTCGTTGTTATATATGTTTCGATGAATTCGATTTCAATGCTGAGTGCTACACACTTCCATGTCAACATTTCTTTCATAAAAAATGTATCGCACGCAAACTACAAACTAATCAGACTTGCCCCTTTTGTCGCCAATCTCTGCAAACGGTAAAAGACTAG 657 0.3881 MSTSAQTGPFRYSISLMGTELTTHMPAAIFRLSMRVFFQFFPLQPRGPPFILIPSQTFCQEGPDLLQTLLLSLLSPLSPLSSLRLFDTNIVDRLVNMVANEIREIFHIVDHAVTSSVSQSPEIPLWIVINVTDSSMHTTTQYPLRTVPIVEKPIDTLKKSTVLQNECRCYICFDEFDFNAECYTLPCQHFFHKKCIARKLQTNQTCPFCRQSLQTVKD 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03161 218 SUPERFAMILY RING/U-box 155 216 - -
Vimu7g03161 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 132 216 IPR013083 -
Vimu7g03161 218 SMART ring_2 169 209 IPR001841 -
Vimu7g03161 218 Pfam Ring finger domain 168 210 IPR001841 -
Vimu7g03161 218 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Vimu7g03161 218 PANTHER SI:CH211-59O9.10 25 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03161 Vimu-Chr7 26768376 26769124 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03161 94 210 C3H Transcription Factor Family AT3G15740 24.590 3.12e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03161 - K11982 vum:124843592 214.927