Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03160 ATGAGTACTGGACCTACTACTCTCATGTCTGCAGCTATTTTCAGACTTAGCATGAGAGTTTTATATCAATTTTTTCCACTTGAACTACAAGGTTCTCCTTTTACTCTTGTACCGAGCCAAACTTTTTTTCAAGAGGGTCCAGATTTCTTGTGGACAACATTATCGTCACTGTCATCGTTTAGACTCTTCGACACTGACATTATTGAAACACTAGTAAACATGAGTGTTGACAAAATTCGAAGAATCTTTTACATTGATGATCATGCTGCTACTTCTTCAGAATCTCAACCCCCAGAAATTCGTCTGTGGATTGATATCAATGTCACTGATAGCAGCATGTATGGAGCAACACAATATCCTTTAAAAACGCTTCCAGCAGTCGAAAAATCCATTGACACGTCGTTGAAGAAATCTACAGTATTACAGACTGAGTATTGTTGCATATGTTTGGATGAATTCGATCTCAATGTTGAGCGTTACACTCTTCCCTGTCAACACTTCTTTCATAAAAACTGTATTACACGCTGGCTACAAATCTGTCAGACTTGTCCCATGTGTCGTCAATCTCTACAAATTTTAAAAGACTAA 588 0.3776 MSTGPTTLMSAAIFRLSMRVLYQFFPLELQGSPFTLVPSQTFFQEGPDFLWTTLSSLSSFRLFDTDIIETLVNMSVDKIRRIFYIDDHAATSSESQPPEIRLWIDINVTDSSMYGATQYPLKTLPAVEKSIDTSLKKSTVLQTEYCCICLDEFDLNVERYTLPCQHFFHKNCITRWLQICQTCPMCRQSLQILKD 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03160 195 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Vimu7g03160 195 Pfam Ring finger domain 145 187 IPR001841 -
Vimu7g03160 195 SMART ring_2 146 186 IPR001841 -
Vimu7g03160 195 CDD RING-H2_PA-TM-RING 146 187 - -
Vimu7g03160 195 SUPERFAMILY RING/U-box 135 192 - -
Vimu7g03160 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 192 IPR013083 -
Vimu7g03160 195 PANTHER TARGET OF ERK KINASE MPK-1 46 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03160 Vimu-Chr7 26765269 26765856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03160 122 192 C3H Transcription Factor Family AT3G30460 35.211 1.63e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03160 - - vum:124843592 216.853