Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03155 ATGTTGGCGAGGACGGGGTTGCCGATTGATGACTATTCCTTGCCCAGAAGACTAGATCCAACGGTAGATCACATTTCTGTAGCAGACAGCAAATCGTATCCGACGGCGAGTGCTTGTGCAGTGCAGTGGGAGAAAAGAAGATCAGAAGAGAAAAGCATGGAAAATGGAAATGAGAAGGATGAAGGGGAAGAAGCAGTGAAAGAGGGTGAAATGGTGAAGAAGATAACAATAACGTTAGTGTGTGGTAATGGGAAGGGTTCAAGAAGAGGGTCATCATCATCATCTTCTAGTTTTTGTCAGGCAGATGAATGTGGTATGAACTTGAACATGGCCAAGAGTTACAACCGCCGTCACAAGGTTTGTGACAGACATTCTAAGGCTCCTGTTGTTTTACTTTCTAGCATTCGTCAGAGGTTCTGCCAACAATGTTCCATGAACTTGCAGAATTTGATGAGACGAAAAGAAGTTGCAGGAGAACATTGGCTGAACATAATGAACGAAGAAGAAAAAGTCGCACAAACATGTCCTTGGGAGGTGAATAACATCGTACACATGTTCATCTCAAGTGACCAATTTCAAACTTAA 585 0.4308 MLARTGLPIDDYSLPRRLDPTVDHISVADSKSYPTASACAVQWEKRRSEEKSMENGNEKDEGEEAVKEGEMVKKITITLVCGNGKGSRRGSSSSSSSFCQADECGMNLNMAKSYNRRHKVCDRHSKAPVVLLSSIRQRFCQQCSMNLQNLMRRKEVAGEHWLNIMNEEEKVAQTCPWEVNNIVHMFISSDQFQT 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03155 194 ProSiteProfiles Zinc finger SBP-type profile. 96 172 IPR004333 GO:0003677
Vimu7g03155 194 Gene3D - 94 160 IPR036893 GO:0003677|GO:0005634
Vimu7g03155 194 MobiDBLite consensus disorder prediction 44 67 - -
Vimu7g03155 194 SUPERFAMILY SBT domain 98 144 IPR036893 GO:0003677|GO:0005634
Vimu7g03155 194 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 57 144 IPR044817 GO:0003677
Vimu7g03155 194 Pfam SBP domain 99 145 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03155 Vimu-Chr7 26705149 26707756 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03155 89 144 SBP-box Gene Family AT2G33810 51.786 1.28e-15 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu7g03155 SBP 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03155 - - vra:106776693 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03155 7 26705149 26707756 Vimu7g03155 7 26705149 26707756 ECH