Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03136 ATGGTTCAACCAAGTAATGTAACTCCCCTATCATCCACCCCACTTTCTTCCTTCGATGACAACACCTTTGATGATGTTACCGATTCTTCCACTCATCCAAAATCTCCCTCCTCCTCCTCATCAAAGAGGACACGCGGTAGGCCTGTGGGCTCTAAGAATAAACCAAAATTAACCCTTGTGATTGACCAAGACAATAAGCATACCCAAAAACCTATTTTCATTCAAATCCCTAAAAATTCTGATGTGATTGAGGCACTGATCCAATTCGCCTATGATTACCAAATTAGCATCATGGTACAAAGTGCATCAGGATCTATTATGAATGTCACTCTCCGTGATAGTGAATCCATAACTTCTACTTTCATTATTCATGGACCCTTCACATTAGTTTCCCTTATTGGCACTTGCATAAATAATGATTGTTCTTTTAACATTTCCTTTTGTTCAAAAATACGTCAAAGCTTTATTGGAGTTGTTGGAGGAAAGGTTGTAGCAGGTGATGATGTTATTGTAGTTGCTACTATTTTCAATAACTCTGAGAATAACAAAAATGAAAACTGA 561 0.3761 MVQPSNVTPLSSTPLSSFDDNTFDDVTDSSTHPKSPSSSSSKRTRGRPVGSKNKPKLTLVIDQDNKHTQKPIFIQIPKNSDVIEALIQFAYDYQISIMVQSASGSIMNVTLRDSESITSTFIIHGPFTLVSLIGTCINNDCSFNISFCSKIRQSFIGVVGGKVVAGDDVIVVATIFNNSENNKNEN 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03136 186 ProSiteProfiles PPC domain profile profile. 66 186 IPR005175 -
Vimu7g03136 186 CDD DUF296 70 140 IPR005175 -
Vimu7g03136 186 Gene3D - 70 183 - -
Vimu7g03136 186 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 180 IPR014476 GO:0003680
Vimu7g03136 186 MobiDBLite consensus disorder prediction 1 60 - -
Vimu7g03136 186 Pfam Plants and Prokaryotes Conserved (PCC) domain 70 177 IPR005175 -
Vimu7g03136 186 MobiDBLite consensus disorder prediction 1 46 - -
Vimu7g03136 186 SUPERFAMILY AF0104/ALDC/Ptd012-like 69 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03136 Vimu-Chr7 26595309 26595908 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03136 42 183 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.117 2.93e-22 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03136 - - var:108336502 266.544