Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03134 ATGGCTGAATCGCTTAAATTATCATCATCCACCCCACTTTCTTCTTCTGATGACAGTACCTTTGATGATGCTATTAATTCTTCCTCTCATCCAAAATCATCACCTTCCTCATTACCATTAAAAAGGACACGAGGTAGGCCTGTAGGTTCCAAGAACAAACCAAAATTAACCCTTCCAATTAATCAAAACAATGAACATGCCCAAAAACCTATTTTAATCCAAATCCCTAAACACTCTGATGTGATTGAGACACTGAGCAAATTTGCCCGTGACTACAAAATTAGCATTACAGTGAGAAGTGCATCAGGATCTATTCTGAACGCCACCCTCCGTGACAATCAATATGGAACTTCTACTTTCATTGTTCATGGACCCTTCACTTTAGTTTCTCTTACTGGCACTTGCATAAATAACAACTCTTCTAGTACTTCATTATCGTCTAATGTTGATCTTGATTGTTTCTTCAATATTTCTTTTTGTTCAAGTTCAGGTCAAAGTTTTATTGGAATTGTTGGAGGAAGGATTACGGCAGGTGACAATGTTGTTCTGACTATTACTGTTTTTAGAAACTCTTAA 576 0.3681 MAESLKLSSSTPLSSSDDSTFDDAINSSSHPKSSPSSLPLKRTRGRPVGSKNKPKLTLPINQNNEHAQKPILIQIPKHSDVIETLSKFARDYKISITVRSASGSILNATLRDNQYGTSTFIVHGPFTLVSLTGTCINNNSSSTSLSSNVDLDCFFNISFCSSSGQSFIGIVGGRITAGDNVVLTITVFRNS 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03134 191 ProSiteProfiles PPC domain profile profile. 65 191 IPR005175 -
Vimu7g03134 191 MobiDBLite consensus disorder prediction 1 63 - -
Vimu7g03134 191 CDD DUF296 69 188 IPR005175 -
Vimu7g03134 191 Pfam Plants and Prokaryotes Conserved (PCC) domain 69 189 IPR005175 -
Vimu7g03134 191 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 19 190 IPR014476 GO:0003680
Vimu7g03134 191 Gene3D - 69 190 - -
Vimu7g03134 191 SUPERFAMILY AF0104/ALDC/Ptd012-like 68 189 - -
Vimu7g03134 191 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03134 Vimu-Chr7 26578784 26579359 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03134 40 190 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.641 5.97e-22 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03134 - - var:108336502 223.787