Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03122 AAGGTCATTGAACACAAACCATATGACCAGAAGGCAGATGTTTTCAGTTTTGGAATAGCTCTCTGGGAGCTTTTAACTGGAGAACTACCGTACTCTTGCTTGACCCCATTACAAGCAGCAGTCGGCGTGGTGCAGAAGGGCCTAAGGCCTACAATTCCAAAAACAACACACCCAAGACTTTCTGAACTGCTTCAGCGCTGCTGGCAACAAGATCCGACTCTCAGACCAGATTTCTCTGAAATAATAGAAATTCTTCAGCACATAGCAAAAGAGATTAATAATGATCACAAGGATAAATCATCCCATGGCTTTCTCTCAGCTCTTAGACGGGTCCATCACTGA 342 0.4415 KVIEHKPYDQKADVFSFGIALWELLTGELPYSCLTPLQAAVGVVQKGLRPTIPKTTHPRLSELLQRCWQQDPTLRPDFSEIIEILQHIAKEINNDHKDKSSHGFLSALRRVHH 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03122 113 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03122 113 Pfam Protein tyrosine and serine/threonine kinase 2 85 IPR001245 GO:0004672|GO:0006468
Vimu7g03122 113 Gene3D Transferase(Phosphotransferase) domain 1 1 110 - -
Vimu7g03122 113 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 90 - -
Vimu7g03122 113 SUPERFAMILY Protein kinase-like (PK-like) 2 85 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03122 Vimu-Chr7 26507041 26507665 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03122 1 112 MAP Kinase Kinase Kinase AT4G35780 67.257 3.82e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu7g03122 PK_Tyr_Ser-Thr 2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03122 - - gmx:100803377 216.853