Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03121 ATGACAAATCAGGGCATACATTGTGCTGCCAATGATCATTACCAGACAAGGATAGAGCAATCCCCTCACTGCATTCAAATACCTACTGACGGAGCTGATGTATGGGAACTTGATACCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAAGATGTTGCTATCAAAGTTCTGAAGCCAGAACGCATAAGTACAGATATGCTGAAGGAGTTTGCACAAGAAGTTTATATCATGAGGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTAAGAGGATTCCATGAATATTGA 462 0.3918 MTNQGIHCAANDHYQTRIEQSPHCIQIPTDGADVWELDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLKEFAQEVYIMRGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVRGFHEY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03121 153 Gene3D Phosphorylase Kinase; domain 1 35 93 - -
Vimu7g03121 153 ProSiteProfiles Protein kinase domain profile. 42 153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03121 153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vimu7g03121 153 Gene3D Transferase(Phosphotransferase) domain 1 94 148 - -
Vimu7g03121 153 Pfam Protein tyrosine and serine/threonine kinase 89 146 IPR001245 GO:0004672|GO:0006468
Vimu7g03121 153 SMART tyrkin_6 42 153 IPR020635 GO:0004713|GO:0006468
Vimu7g03121 153 SUPERFAMILY Protein kinase-like (PK-like) 32 145 IPR011009 -
Vimu7g03121 153 ProSitePatterns Protein kinases ATP-binding region signature. 48 69 IPR017441 GO:0005524
Vimu7g03121 153 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 35 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03121 Vimu-Chr7 26498528 26505584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03121 12 147 MAP Kinase Kinase Kinase AT4G35780 59.394 1.68e-63 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vimu7g03121 PK_Tyr_Ser-Thr 2.2e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03121 - - vum:124820684 287.345