Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03117 ATGGAATCTACAAAGATAGAGCATGAGAAGCTCGACATGGATTTGAAAGAGAAGAAAGCTCTTCATAGTTTCCTTCGTGGTCTCATTCTTGATTCTTCTTCATCTCCGTTCAAGAGGTCTACGCTTGAAGATCTCGTTGAAATGGCATGCCGATTCTCCGCCGAGAAGGTAAACTCCGTAATTCTCTTAGATTATGATGATAATGATTATCCTGTAATGTTGATGCACCGCGTGGCATTTGACGACGAGTCTTTGTATGTGTCTGTGTTTGTTATTGCTATTGCGATGGCTATGGCTGAAGCATTTCGTTGTGCCGTGTTCGAATCTGTGGCGATAATTGAGATCCACAATGAACCCTCACATTCGGGCTGGTTTATGCGTGCGAAGCGGTGCCATTCCCAAGCCGCAGATGAAAGGACTTGTTTGCCTTTGTCCAATTTCAAGTGGGGTCCTCAACCGAGTTTTGCTCTGATTCTCTGCCCAAATCCTAGAGGGATGAATGTGAGGACACTGAGATTACTGGTTAATGAAACTATTTGTCCTTGTGTTATGATTGAATATTTCAGGAATTCAAGTCAAGATCGAGGTCTAGGTCTAGATCTAGGCCAAGGTCTAGGTCCCGGTCAAGGTCATTTGAAAAACAAAGGCCAAGGTCTCGCTCCAGAAGTCGTGGAAGGGAATACACTTTATGTCACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTGGAGGAGCATTTCTCTAAAGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCCCGTACTCGCATTTCTCGAGGTTTTGCTTTTATTACAATGGATACCGTTGAGGATGCAAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGGTTTTGTGGTCGTATTCAGAATACATTGCCTCAGCTATTTTGGCAGCAATCAAAGATGATCAGTTCATCCATTCCCGAAGAAAGCGTGCAAGAACTCCTACACCTGGACACTATCTTGGCCTGAAAAGTACTCGAGACTATGGTAAGTTTGAGACAGCGTATAGAGGAGGTGGATCTGGTCGTGATGATTATGCATATCGAGGAGAGCGTGGAAGGTCTCCAAGGCGCTCACCTTATCGAGGTGGTAGAGATTATTCTCCAAGGCATTCACCGCCACCTTATGGCGGAAGAACTAGGAGGGATAGGTCCAGGTCACTCCCATATTCTCCATATGGTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGTGA 1278 0.4562 MESTKIEHEKLDMDLKEKKALHSFLRGLILDSSSSPFKRSTLEDLVEMACRFSAEKVNSVILLDYDDNDYPVMLMHRVAFDDESLYVSVFVIAIAMAMAEAFRCAVFESVAIIEIHNEPSHSGWFMRAKRCHSQAADERTCLPLSNFKWGPQPSFALILCPNPRGMNVRTLRLLVNETICPCVMIEYFRNSSQDRGLGLDLGQGLGPGQGHLKNKGQGLAPEVVEGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERVLWSYSEYIASAILAAIKDDQFIHSRRKRARTPTPGHYLGLKSTRDYGKFETAYRGGGSGRDDYAYRGERGRSPRRSPYRGGRDYSPRHSPPPYGGRTRRDRSRSLPYSPYGSPDRRYARGSR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03117 425 SMART rrm1_1 228 301 IPR000504 GO:0003723
Vimu7g03117 425 Gene3D - 209 407 IPR012677 -
Vimu7g03117 425 MobiDBLite consensus disorder prediction 363 425 - -
Vimu7g03117 425 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 226 412 - -
Vimu7g03117 425 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 229 298 IPR000504 GO:0003723
Vimu7g03117 425 SUPERFAMILY RNA-binding domain, RBD 223 303 IPR035979 GO:0003676
Vimu7g03117 425 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 227 301 IPR000504 GO:0003723
Vimu7g03117 425 MobiDBLite consensus disorder prediction 364 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03117 Vimu-Chr7 26450572 26454379 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03117 228 306 Eukaryotic Initiation Factors Gene Family AT1G49760 36.709 3.93e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03117 K12897 - gmx:100527350 299.671