Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03115 ATGGCGGACACTGGTGGCGACGATAATGGCGTCACCTATCTTCACGGTGACCTCGATTTGAAAATTATCGAGGCGAGGCACTTGCCGAACATGGACATCTTCTCGGAGCGTCTCCGCCGCTGCGTAACCGGCTGCGACACTATCAAATTCCACTCCGAGGACCCCGCTGACGGTGGAAGCCAGCGGACGCGGCAGCACCGCCACCGGAGGATCATAACAAGTGACCCGTACGTGACGGTTTCGGTGCCGCAGGCGACGGTGGCGCGCACGCGCGTGCTGAAGAACTCGTCGGATCCTCAGTGGAACGAGCGGTTCCACATCCCGCTCGCGCATCCGGTTGTGGATTTGGAGTTCCGCGTGAAGGACGACGACGCTTTCGGCGCGCAGATAATTGGAACCGTGAAGATTCCGGCGCAGCGGATTGCCACCGGCGAGTTGATTTCCGGCTGGTTCCCTGTCGTCGGGCCGTCTGGGAAGCCGGCGAAGCCGGACACGGCGCTGCACGTGGAGATGAAATTCATGTCGGTGGAGAAGAATTTGCTTTACAAGCGAGGCATTGCGGCGGATCCGGAGCAACGCGGAGTGAGGCACACGTATTTTCCGGTGAGAAAGGGGAGTTCGGTGAGGTTGTACCAGGATGCGCAATGTCCTGAAACTGGCGGAGCGAAGTTGCCGGAGGTTAAGCTTGAGAATGGAGAGGTTTACAGGCACGGAAAGTGTTGGGAGGATATTTGTTATGCCATATCTGAGGCTCATCACATGGTGTATTTGGTGGGCTGGTCGATTTACCATAAGGTGAAGCTTGTTAGAGAGCCTACTAGGCCGTTGCCACGAGGTGGCGATTTGACGCTTGGCCAATTGCTGAAGTATAAGTCTGAAGAAGGGGTGAGAGTGCTGTTGCTAGTTTGGGATGATAAAACTTCGCACGACAAGGTTTTCCTCAAGACGACTGGTGTGATGCAGACTCATGATGAGGAAACCAGGAAGTTTTTTAAACATTCTTCAGTAATGTGTGTTCTGTCGCCTCGAGTTGATACGTCCCTCCTGTATGTTGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATCGTGGACACACAGGCCACGGGGAATAATCGGAAGATAACTGCTTTTATTGGAGGTCTTGATCTTTGTGATGGTCGCTATGACACACCTGAGCATCGTCTGTTTCGTGATCTTGGCACTGTATTTTCTGAGGATTTCCACAATCCTACATTTCCTGCTGGAACAAGGGCTCCTAGACAACCATGGCATGATTTACACTGCAGAATAGATGGACCTGCTGCATATGATGTTCTTATTAATTTTGAGCAGCGATGGAAAAAGGCAACTAAGTGGAAAGAATTTGCGATCCTTTTCAAAAAATCCTCTCAATGGCATGATGATGCTTTGATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCCGTTACCATAAAGGATAGTTATACAGTTGTTCCAGAGGATGATCCTTTAGTATGGGTTTCTAGGGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGGTCCCTCAGAGGATTTCCAAAACATTCTGATCGCACCGCTCTTATCTGCGCCTTCATTCTATCAACCGCCATTGGCTTCCCCCCACACGATTCCGGCAGCGCAGCGATACGACATTGGTCTACTCTGTTTGCGGAGAAGGGACATCCTGTAAAATTTGATTCATTGATCTTGAAGGCAAAAGAAGACAAAGTTGAATGCACAAAAAGAAAATGGGCCGATAATCTTATTCCAATGGAGTTGGCACTGAAAATTGCTAGTAAAATCAGAGCTAAGGAAAGGTTTGCTGTCTATGTTGTTTTACCAATGTGGCCAGAAGGTGATCCAAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAAACAATGCAAACAATGTATAACGTAGTTGCTAGGGAGTTAAAAGCAATGCAACTTTCTGATATAAACCCACAAGATTACCTCAATTTTTATTGCCTTGGTAATCGGGAAGACTTCAATGAAGAAAGTTCAAGCACTAATGGTGCACAGGTCTCAGGAGCATATAAATATCGCAGATTTATGATTTATGTGCATGCTAAGGGAATGATCGTTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAACCCCATTACACATGGTCAGCAAAGCAAAGACATCCATATGGTCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGTTAGATGAAACTTTTGAGGAGCCAGAGAGTTTGGAGTGTGTGCATAAAGTGAATCAAATTGCTGAAAACAATTGGAAATTATTCGCTTCTGAAGATTTCTCACTATTGCAAGGACATCTTCTTAAGTATCCTGTAAAGGTAGATTCTGATGGAACGATTAGATCCCTACCCGACTGTGAGAATTTTCCCGATGCTGGCGGTAAGATATTAGGCGCTCACTCCACAGCAATCCCAGATATTCTAACAACTTAA 2586 0.4695 MADTGGDDNGVTYLHGDLDLKIIEARHLPNMDIFSERLRRCVTGCDTIKFHSEDPADGGSQRTRQHRHRRIITSDPYVTVSVPQATVARTRVLKNSSDPQWNERFHIPLAHPVVDLEFRVKDDDAFGAQIIGTVKIPAQRIATGELISGWFPVVGPSGKPAKPDTALHVEMKFMSVEKNLLYKRGIAADPEQRGVRHTYFPVRKGSSVRLYQDAQCPETGGAKLPEVKLENGEVYRHGKCWEDICYAISEAHHMVYLVGWSIYHKVKLVREPTRPLPRGGDLTLGQLLKYKSEEGVRVLLLVWDDKTSHDKVFLKTTGVMQTHDEETRKFFKHSSVMCVLSPRVDTSLLYVVVGTVFTHHQKCVIVDTQATGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLGTVFSEDFHNPTFPAGTRAPRQPWHDLHCRIDGPAAYDVLINFEQRWKKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSVTIKDSYTVVPEDDPLVWVSREDDPENWHVQIFRSIDSGSLRGFPKHSDRTALICAFILSTAIGFPPHDSGSAAIRHWSTLFAEKGHPVKFDSLILKAKEDKVECTKRKWADNLIPMELALKIASKIRAKERFAVYVVLPMWPEGDPKTGAMQEILFWQGQTMQTMYNVVARELKAMQLSDINPQDYLNFYCLGNREDFNEESSSTNGAQVSGAYKYRRFMIYVHAKGMIVDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHYTWSAKQRHPYGQIYGYRMSLWGEHLGMLDETFEEPESLECVHKVNQIAENNWKLFASEDFSLLQGHLLKYPVKVDSDGTIRSLPDCENFPDAGGKILGAHSTAIPDILTT 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03115 861 Gene3D Endonuclease Chain A 227 474 - -
Vimu7g03115 861 Pfam Phospholipase D Active site motif 355 390 IPR001736 GO:0003824
Vimu7g03115 861 Pfam Phospholipase D Active site motif 707 733 IPR001736 GO:0003824
Vimu7g03115 861 SUPERFAMILY Phospholipase D/nuclease 200 464 - -
Vimu7g03115 861 Pfam Phospholipase D C terminal 780 850 IPR024632 -
Vimu7g03115 861 SMART C2_3c 17 150 IPR000008 -
Vimu7g03115 861 PANTHER PHOSPHOLIPASE D 10 850 IPR015679 -
Vimu7g03115 861 CDD C2_plant_PLD 10 174 - -
Vimu7g03115 861 FunFam Phospholipase D delta 231 471 - -
Vimu7g03115 861 Gene3D Endonuclease Chain A 575 757 - -
Vimu7g03115 861 SMART pld_4 355 390 IPR001736 GO:0003824
Vimu7g03115 861 SMART pld_4 706 733 IPR001736 GO:0003824
Vimu7g03115 861 Pfam C2 domain 16 153 IPR000008 -
Vimu7g03115 861 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 355 390 IPR001736 GO:0003824
Vimu7g03115 861 PIRSF PLD_plant 5 861 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu7g03115 861 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 175 IPR035892 -
Vimu7g03115 861 SUPERFAMILY Phospholipase D/nuclease 604 791 - -
Vimu7g03115 861 Gene3D C2 domain 14 183 IPR035892 -
Vimu7g03115 861 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 706 733 IPR001736 GO:0003824
Vimu7g03115 861 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03115 Vimu-Chr7 26437686 26448650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03115 1 697 Phospholipase D Gene Family (Wang group) AT4G35790 64.225 0.0 910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03115 K01115 - gmx:100814486 1438.71