Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03105 ATGGACTTTGTGCCAAATCCCTGTCCTTTGCGTTCGTCTTCGCTCGGGAATCTCGTCGAGAGGGTTAAGCAGCTTGGTACCCTCGCCGTCTCCGCCGTCATTGGGAACATCTTCTCTGCGATCTTGACCTTCTGCTTTGCATTAGTGGGCACTTTGTTGGGTGCCTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGAGCCATATCAGGAGCTGTATTTTCCATTGAAGTAGCTATGCAGATTGATGTTATCGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTTCAAAATCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCCAAAAATAAAAATTACAACTGACAACAACATTGATGCATCTGGTGACAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTTTCAGCTTGGAGAAACAGTAAGAAGCTTACCTCATTGCCATCACATGTTTCACCTTCCTTGCATAGATAAGTGGCTCTTTAGACATGGTTCTTGCCCATTATGCAGAAGGGATCTGTAA 645 0.462 MDFVPNPCPLRSSSLGNLVERVKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVAMQIDVIASLLSGRLVRERIGPAMLSAVQNQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNIDASGDRVSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03105 214 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 17 213 IPR044523 -
Vimu7g03105 214 FunFam NEP1-interacting protein-like 1 129 214 - -
Vimu7g03105 214 Pfam Ring finger domain 168 211 IPR001841 -
Vimu7g03105 214 CDD RING-H2_NIPL1-like 168 211 - -
Vimu7g03105 214 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Vimu7g03105 214 SMART ring_2 169 210 IPR001841 -
Vimu7g03105 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 214 IPR013083 -
Vimu7g03105 214 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Vimu7g03105 214 SUPERFAMILY RING/U-box 156 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03105 Vimu-Chr7 26358350 26360107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03105 17 214 C3H Transcription Factor Family AT5G66070 68.056 1.11e-98 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03105 - - gmx:100807641 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03105 7 26358350 26360107 Vimu7g03105 7 26358350 26360107 PCT