Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03099 ATGGTGAGAGGAAGTAAAGAGGTTCTGCAAAAAGCAGCCAAAACCCTATCCGACATCCTCGTTTGCCCTCTTTCTAAGCAACCTTTGAGGTATTGTGAGGAATCAAATTCCCTGATCAGTGATGCTATTGGCGTTGCCTTTCCCGTCGGTTCTAATTCCCCTCTTCTCATAAAAAATGGGGTACCGTGCTTGGTTCCAAGAGATGGGAAGATACTTGAGGAAGAAGATGCGTCAAAACATGATAGTGATACCAATTTATCAGCCGTGAATGAAGAGAGTCATGGAAGAAGAGCAAATGAGATGACTCTGAAAGGCTTGGTATCAGTTGTGAGCAATCTGATTGGGCTAGCCGAGGGCCAAAGGAACAAGGATGTCCCTTTACCTTCTTACATGAGCAATTTAAACGAAGATTGTTTGTGTTGTGTGTGTTTATCAAGGTTAAAGGCAAGAGATGAAATCCGTGTTCTTCCTTGCTCTCACAAATTCCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCACCACAAAACATGCCCACTTTGCCGTTTCTCATTGGGATCAGCAGAGCAGAAGTCTCATCGTCCTGATATCTTCACTGAAGAGATGTTGATATGGTTTTCTTCTTTCCATATAGCTGGTATGTGA 645 0.4264 MVRGSKEVLQKAAKTLSDILVCPLSKQPLRYCEESNSLISDAIGVAFPVGSNSPLLIKNGVPCLVPRDGKILEEEDASKHDSDTNLSAVNEESHGRRANEMTLKGLVSVVSNLIGLAEGQRNKDVPLPSYMSNLNEDCLCCVCLSRLKARDEIRVLPCSHKFHKICVNRWLKGHHKTCPLCRFSLGSAEQKSHRPDIFTEEMLIWFSSFHIAGM 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03099 214 FunFam Predicted protein 19 82 - -
Vimu7g03099 214 Gene3D - 19 83 - -
Vimu7g03099 214 Pfam Ring finger domain 140 182 IPR001841 -
Vimu7g03099 214 PANTHER ZGC:162634 10 82 - -
Vimu7g03099 214 CDD RING-H2_PA-TM-RING 140 182 - -
Vimu7g03099 214 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Vimu7g03099 214 SUPERFAMILY Trm112p-like 14 70 - -
Vimu7g03099 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 188 IPR013083 -
Vimu7g03099 214 MobiDBLite consensus disorder prediction 74 94 - -
Vimu7g03099 214 SUPERFAMILY RING/U-box 134 187 - -
Vimu7g03099 214 SMART ring_2 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03099 Vimu-Chr7 26298217 26301768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03099 125 182 C3H Transcription Factor Family AT5G45290 46.667 2.20e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03099 - - var:108321279 226.098