Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03085 ATGCATCTTTGCACTGTTGGCAGGATTAAGCTTCCTTCTGGTGCGAAGAAGATTGTGCCAAGTGCATGTAGGGCAATGATTGGGCAAGTTGCGGGTGGAGGGAGAACTGAGAAGCCTCTTCTAAAGGCTGGTAATGCTTACCACAAGTTTAGAGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGGCATGCTAGTACTGTCAGACGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCCGCCAGGAGAACTGGTCGTCTTAGGGGGCAAGCTGCTGCCACTGCTTCTAAAGCTGACAAGACTACTTAA 369 0.5176 MHLCTVGRIKLPSGAKKIVPSACRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATASKADKTT 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03085 122 MobiDBLite consensus disorder prediction 67 92 - -
Vimu7g03085 122 FunFam 60S ribosomal protein L2 31 108 - -
Vimu7g03085 122 MobiDBLite consensus disorder prediction 103 122 - -
Vimu7g03085 122 SUPERFAMILY Translation proteins SH3-like domain 8 107 IPR008991 -
Vimu7g03085 122 Gene3D Ribosomal protein L2, domain 3 31 109 IPR014726 -
Vimu7g03085 122 ProSitePatterns Ribosomal protein L2 signature. 58 69 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vimu7g03085 122 PANTHER RIBOSOMAL PROTEIN L2 9 117 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu7g03085 122 SMART Ribosomal_L2_C_2 4 92 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu7g03085 122 Pfam Ribosomal Proteins L2, C-terminal domain 8 86 IPR022669 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03085 Vimu-Chr7 26179088 26179456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03085 8 119 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 94.643 7.10e-74 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03085 K02938 - cit:102626558 216.468