Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03056 ATGATTTCTTCTGTGGCCTTTCAACCGTCTCTTCCCGCCGTTAACTTCTCCGGTAAAGCCGTGACCTCGCCGTCCTGTAAGGCCAGATCCCGCCCAATAGTCGCCTTCGCCACCGCCACTGCCACTGCAACCGAGGAAGCTCGATCTTCCTGGACGGAGAAACCACGCCCTTCGTATCTGAACTCCTCATGCTCTTCTCACTACGATATCCTCGGCATCCCCGCCGGTGCCTCCGCCCAGGAAATCAAGGCCGCGTACCGGCGGTTGGCCAGAGTCTGCCACCCGGACGTGGCGGCGATCGACCGGAAAACTTCCTCGGCGGACGAATTCATGAAGATCCACGCCGCGTACTCCACTCTCTCGGATCCTGACAAACGCGCCAACTACGACCGGAGCCTATTCCGTCGACAACGGCCGCTGTCGACTGCGGCGGTGTTTTCTGGCTACACGCGCCGGAACTGGGAAACGGATCAGTGCTGGTAA 483 0.6004 MISSVAFQPSLPAVNFSGKAVTSPSCKARSRPIVAFATATATATEEARSSWTEKPRPSYLNSSCSSHYDILGIPAGASAQEIKAAYRRLARVCHPDVAAIDRKTSSADEFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTAAVFSGYTRRNWETDQCW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03056 160 Gene3D DnaJ domain 57 152 IPR036869 -
Vimu7g03056 160 PRINTS DnaJ domain signature 86 101 IPR001623 -
Vimu7g03056 160 PRINTS DnaJ domain signature 105 125 IPR001623 -
Vimu7g03056 160 PRINTS DnaJ domain signature 68 86 IPR001623 -
Vimu7g03056 160 SUPERFAMILY Chaperone J-domain 32 129 IPR036869 -
Vimu7g03056 160 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 17 139 - -
Vimu7g03056 160 SMART dnaj_3 65 125 IPR001623 -
Vimu7g03056 160 ProSiteProfiles dnaJ domain profile. 66 133 IPR001623 -
Vimu7g03056 160 CDD DnaJ 67 122 IPR001623 -
Vimu7g03056 160 ProSitePatterns Nt-dnaJ domain signature. 110 129 IPR018253 -
Vimu7g03056 160 Pfam DnaJ domain 67 130 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03056 Vimu-Chr7 25782391 25784722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03056 67 130 C2H2 Transcription Factor Family AT1G74250 43.284 7.69e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03056 - - vra:106777082 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03056 7 25782391 25784722 Vimu7g03056 7 25782391 25784722 ECH