Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03046 ATGATGGAACCTCAACAACCACAAGGGAGCCAACCAAACGACGAGGGTGGCAGTGGAAAAGGGGGCTTTCTCAGCAGGCAAAGTAGTACACGGTGGACTCCCACAACCGACCAGATAAGAATATTGAAGGACCTTTACTACAACAATGGAATTAGATCCCCAAGTGCAGAACAGATTCAGAGGATCTCTGCTAGGCTGAGGCAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCCAGAACCACAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATAATGTGCCCATGCAAAGACCTCCTGCCCCATCTAATGCTCTTCCTTGGAAACCTGATCAAGATCCTCCTATTCATACCAACTATTCTAACATTTCCTCTACGGGTAAACCCTCACTTCATATCTCAACTATTACTCTTTTACCATCTCTCACCTTTTACTATGCAGGGATCTCTTCTGCATCATCTTCTTCTGTTGAGATGATTACTGTCGGCCAGATGGGGAATTATGGCTATGGTTCTGTGCCCATGGAGAAAAGTTTTAGGGACTGTTCAATATCTGCTGGAGGTAGCAGTGGCCATGTTGGAATAAACCACAACTTGGGATGGGTTGGCGTGGATCCTTATTCCTCACCCTACGCCAACTTCTTTGGCAAAATAAGGCCAACTGAAGAAACCCTGGAAGAAGAACAAGAAGAAGATGGTGCTGCTGAGATTGAAACTCTCCCTTTATTCCCTATGCACGGTGAGGACATTCATGGCTATTGCAACCTCAAGTCTAATAATTCTTACAACTATGATGGAAACGGCTGGTATCATTCTGAAGACGGCTTCAAGAATGGTTCTCGTGCTTCTTTGGAGCTCAGTCTCAACTCCTACACTCGCAGATCTCCAGATTTAGCTTAA 915 0.4492 MMEPQQPQGSQPNDEGGSGKGGFLSRQSSTRWTPTTDQIRILKDLYYNNGIRSPSAEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQKKRFTSDNVPMQRPPAPSNALPWKPDQDPPIHTNYSNISSTGKPSLHISTITLLPSLTFYYAGISSASSSSVEMITVGQMGNYGYGSVPMEKSFRDCSISAGGSSGHVGINHNLGWVGVDPYSSPYANFFGKIRPTEETLEEEQEEDGAAEIETLPLFPMHGEDIHGYCNLKSNNSYNYDGNGWYHSEDGFKNGSRASLELSLNSYTRRSPDLA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03046 304 CDD homeodomain 30 92 IPR001356 GO:0003677
Vimu7g03046 304 Gene3D - 24 90 - -
Vimu7g03046 304 MobiDBLite consensus disorder prediction 1 15 - -
Vimu7g03046 304 SMART HOX_1 27 95 IPR001356 GO:0003677
Vimu7g03046 304 MobiDBLite consensus disorder prediction 89 113 - -
Vimu7g03046 304 SUPERFAMILY Homeodomain-like 23 97 IPR009057 -
Vimu7g03046 304 ProSiteProfiles 'Homeobox' domain profile. 25 91 IPR001356 GO:0003677
Vimu7g03046 304 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 9 297 IPR044555 GO:0003700|GO:0099402
Vimu7g03046 304 MobiDBLite consensus disorder prediction 1 35 - -
Vimu7g03046 304 Pfam Homeodomain 29 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03046 Vimu-Chr7 25694021 25695417 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03046 23 254 Wox Gene Family AT2G17950 42.322 1.53e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu7g03046 Homeodomain 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03046 - - vra:106776674 558.14