Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03044 ATGGGAAGGGTAATTCGCGCACAGCGTAAGGGTGCGGGGTCCGTTTTCAAGTCCCACACCCATCACCGCAAGGGTCCGGCGAGGTTCCGCAGCCTTGACTTTGGCGAACGCAACGGCTACCTGAAGGGAGTGGTCACCGATATCATCCACGACCCCGGTCGAGGTGCCCCTCTCGCGAAGGTCACTTTCCGCCATCCCTTCCGCTACAAGAAGCAGACAGAACTATTCGTTGCGGCCGAAGGTCTATATACTGGCCAGTTCCTCTACTGCGGCAAGAAGGCAACCCTCGTAGTTGGCAACGTCTTGCCCCTCCGATCCATCCCCGAGGGTGCTGTCATCTGCAACGTTGAACACCATGTAGGTGATCGCGGTGTCTTCGCCAGAGCATCCGGTGACTACGCCATTGTTATCAGCCACAACCCCGATAATGACACCTCAAGGTTCCTCCTCGCACCTTTACATTTTGTCTCAGGATTATTGTCTTTTGATTGTTTTGTTTGTTTTTGGGATGGGGATCTATTGCTTTGCGTAATGGCGTGTTTGAATGCATCTTTGCACTCTTTTGGCAGAATCAAGCTTCCTTCTGGAGCGAAGAAGATTGTGCCGAGTGCATGTAGGGCAATGATTGGGCAAGTTGCAGGTGGAGGAAGAACTGAGAAGCCTCTTCTAAAGGCTGGTAATGCTTACCACAAGTTTAGAGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCTATGAACCCAGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGGCATGCTAGTACTGTCAGACGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCCGCCAGGAGAACTGGTCGTCTTAGGGGGCAAGCTGCCGCCACTGCTTCTAAAGCTGACAAGACTACTTAA 915 0.5301 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQTELFVAAEGLYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVISHNPDNDTSRFLLAPLHFVSGLLSFDCFVCFWDGDLLLCVMACLNASLHSFGRIKLPSGAKKIVPSACRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATASKADKTT 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03044 304 Pfam Ribosomal Proteins L2, C-terminal domain 187 268 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 Pfam Ribosomal Proteins L2, C-terminal domain 98 140 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 Gene3D - 88 212 IPR014722 -
Vimu7g03044 304 Gene3D Ribosomal protein L2, domain 3 213 290 IPR014726 -
Vimu7g03044 304 SUPERFAMILY Translation proteins SH3-like domain 180 289 IPR008991 -
Vimu7g03044 304 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Vimu7g03044 304 FunFam 60S ribosomal protein L2 213 290 - -
Vimu7g03044 304 Pfam Ribosomal Proteins L2, RNA binding domain 13 89 IPR022666 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 ProSitePatterns Ribosomal protein L2 signature. 240 251 IPR022671 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 FunFam 60S ribosomal protein L2 1 86 - -
Vimu7g03044 304 Gene3D - 1 86 IPR012340 -
Vimu7g03044 304 SUPERFAMILY Translation proteins SH3-like domain 99 142 IPR008991 -
Vimu7g03044 304 SMART Ribosomal_L2_C_2 96 274 IPR022669 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 179 298 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 150 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 PANTHER RIBOSOMAL PROTEIN L2 2 147 IPR002171 GO:0003735|GO:0005840|GO:0006412
Vimu7g03044 304 MobiDBLite consensus disorder prediction 253 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03044 Vimu-Chr7 25656212 25657606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03044 1 301 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 81.063 1.06e-175 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03044 K02938 - gmx:100798311 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03044 7 25656212 25657606 Vimu7g03044 7 25656212 25657606 ECH
Vimu7g03044 7 25656212 25657606 Vimu7g03044 7 25656212 25657606 PCT