Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03038 ATGTCTGACGTTGCCGGAGAAGCTCCTGTACCCGCTCCCGCCGTGGAAAAGCCGCTGGAGGAGGTGAAGGCGGCGAAGGAGAAGAAAACTAAGGCTCCGAAAGAGAAGAAGCCGAAACAGGCTAAAACTGCTGCGCATCCTCCATATTTTCAGATGATTAAGGAGGCTTTGGTGGCGCTGAACGAGAAAGGAGGATCGAGCCCTTATGCTATAGCGAAGTACATGGAGGAGAAGCACAAGTCGGTGCTTCCCGCGAATTTCAAGAAGATTCTAGGTCTGCAATTGAAGAACCAAGCCGCAAGGGGAAAACTCTTGAAGATCAAGGCCTCGTATAAGCTATCCGAAACCGCAAAGAAAGAGAAGAAGGAGACGAAGGCCAACGCTGAGAAGAAAGAATCGCGTCCGAAACGTAGCAGAAGAGCAACCACCGCTGCTCCGACGAGCAAGAAAACTGAGGCGGTTAAAAAGGCCGGAAAGAAGGTTGGGCCGAAGAAGAGTAAGAAGGTGTCGACTCCCGCGAAGCCCAAACAGCCCAGGTCTATTAGGTCTCCGTCCAAGAGGGCCCGGAAAGCCACCGTTACTGCCGCTTGA 591 0.5262 MSDVAGEAPVPAPAVEKPLEEVKAAKEKKTKAPKEKKPKQAKTAAHPPYFQMIKEALVALNEKGGSSPYAIAKYMEEKHKSVLPANFKKILGLQLKNQAARGKLLKIKASYKLSETAKKEKKETKANAEKKESRPKRSRRATTAAPTSKKTEAVKKAGKKVGPKKSKKVSTPAKPKQPRSIRSPSKRARKATVTAA 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03038 196 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu7g03038 196 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu7g03038 196 PRINTS Histone H5 signature 167 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu7g03038 196 PRINTS Histone H5 signature 130 144 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu7g03038 196 Gene3D - 40 134 IPR036388 -
Vimu7g03038 196 PANTHER HISTONE H1 23 179 - -
Vimu7g03038 196 MobiDBLite consensus disorder prediction 110 196 - -
Vimu7g03038 196 MobiDBLite consensus disorder prediction 1 48 - -
Vimu7g03038 196 MobiDBLite consensus disorder prediction 112 139 - -
Vimu7g03038 196 Pfam linker histone H1 and H5 family 46 112 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu7g03038 196 SMART h15plus2 43 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu7g03038 196 Coils Coil 111 134 - -
Vimu7g03038 196 CDD H15 43 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu7g03038 196 SUPERFAMILY "Winged helix" DNA-binding domain 42 125 IPR036390 -
Vimu7g03038 196 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03038 Vimu-Chr7 25603035 25603730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03038 33 113 Single Myb Histone (SMH) Gene Family AT1G72740 38.272 3.42e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03038 K11275 - gmx:100500169 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03038 7 25603035 25603730 Vimu7g03038 7 25603035 25603730 ECH