Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03037 TTTCTTCTCTCTCTCTTTCCCCATTTCCTTATCTTTTTTAACCCGGCCCAGGGAAGAAAATCATTGTTTCTGAAATCATGGGGTTTTGTTTATAACACGCGCTTATATTTATTTCCTATGGAATTTGGTATTAACAGTGGTGGTGAATTTGATGCAGTACCAATATTTGCTATGATGGAGTCGATGGAGTCATGTGTCCCACCTGGGTTTCGGTTCCACCCAACAGATGAAGAGCTTGTTGGTTACTATCTGAGGAAGAAGGTGGCTTCTCAAAAGATTGACCTTGACGTTATCAGAGAGATCGATCTATATCGTATTGAACCATGGGATCTCCAAGATAGATGCAGGATCGGGTATGAAGAGCAGAATGAGTGGTATTTTTTCAGCCACAAAGATAAAAAGTATCCAACAGGGACAAGAACTAATAGAGCTACCATGGCTGGGTTTTGGAAGGCTACAGGAAGAGACAAAGCAGTGTATGACAAGGCAAAACTAATTGGGATGAGAAAAACCCTTGTTTTCTACAAAGGAAGAGCCCCTAATGGACAAAAGTCTGATTGGATCATGCACGAGTATAGACTCGAATCCGACGAGAATGGACCTCCACAGGAGGAAGGATGGGTTGTGTGCAGAGCCTTCAAGAAAAAAACCACTGGACAGACAAAGACTATTGAAGGATGGGACTCAAGCTACTTCTTCGAGGAAGGAAGTGGTGTAAGCAACGTGGTTGATCCAATTGATCTCATTTCAAGGCAGTCTCAGAGCTTTTTATCTCAAAATTTCTTGTGTAAGCAAGAGATAGAAGCGGATAACTTGAGTTGCATGCTTCAAGATCCATTTGTACAACTTCCTCAGCTAGAAAGCCCGTCTTTGCCATTAGTGAAGAGGCCAAGCACAGTGTCACTGGTATCGGACAATAACGAAGACGAAGACATTCAAAACAGGTTATCCAACAACAACACAAAGAAAGTCACTGATTGGAGAGCTCTTGACAAGTTTGTAGCCTCTCAACTGAGTCAAGAAGACACGCTTGAAACCAATGGTCTCTCAAGCTTTGAACCCCATGATAGCCACGACATGGCACTGCTGTTACTGCAGAGCAGTAGGGATGAAGGGAACAGGCTAAGCCCTTTTCTAAACACAAGCTCAGACTGTGATATTGGGATATGCGTGTTTGAAAAATGA 1185 0.4278 FLLSLFPHFLIFFNPAQGRKSLFLKSWGFVYNTRLYLFPMEFGINSGGEFDAVPIFAMMESMESCVPPGFRFHPTDEELVGYYLRKKVASQKIDLDVIREIDLYRIEPWDLQDRCRIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAVYDKAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLESDENGPPQEEGWVVCRAFKKKTTGQTKTIEGWDSSYFFEEGSGVSNVVDPIDLISRQSQSFLSQNFLCKQEIEADNLSCMLQDPFVQLPQLESPSLPLVKRPSTVSLVSDNNEDEDIQNRLSNNNTKKVTDWRALDKFVASQLSQEDTLETNGLSSFEPHDSHDMALLLLQSSRDEGNRLSPFLNTSSDCDIGICVFEK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03037 394 Gene3D NAC domain 75 219 IPR036093 GO:0003677|GO:0006355
Vimu7g03037 394 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 63 310 - -
Vimu7g03037 394 FunFam NAC domain-containing protein 75 219 - -
Vimu7g03037 394 SUPERFAMILY NAC domain 58 215 IPR036093 GO:0003677|GO:0006355
Vimu7g03037 394 ProSiteProfiles NAC domain profile. 66 215 IPR003441 GO:0003677|GO:0006355
Vimu7g03037 394 Pfam No apical meristem (NAM) protein 67 194 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03037 Vimu-Chr7 25591766 25594386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03037 59 393 NAC Transcription Factor Family AT2G18060 64.946 5.65e-163 460
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu7g03037 NAM 7.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03037 - - pvu:PHAVU_002G110900g 682.945