Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03036 ATGCATTATTATGTGTTAAACATTGAAACGCGTGGTGTCTGTAGTTCATTTGCTATTGTTTTCTATACGGGCCTCAAGAGATTTTTTGGTGGATGGGCCGGCCTTTCTGTTTTCAGCCACACCTGCTATTTTCAAGGTGGCAGAGAGGGTCCGTTCAAGAAACTTCCGAGAGGGAGAGCGAAGAAGAGAAGGCGAAAAAGCAATAATAACAGTAATAGCAACAGATCTCACTGTCGTCTGGCCGAAGCCAAAATCCAGAGAAAGAAAGAAAGAATGGTTGATTTCAGCGGCGATGAAACTGCCCCATTCTTCGGCTTCCTGGGCGCCGCGGCGGCCCTCGTTTTCTCCTGCATGGGGGCGGCGTACGGTACGGCGAAGAGCGGCGTCGGTGTTGCCTCAATGGGCGTGATGAGGCCGGAGCTGGTGATGAAATCGATTGTGCCGGTTGTCATGGCCGGAGTGCTTGGCATCTACGGCTTGATCATCGCAGTGATAATCAGCACGGGAATTAACCCTAAGGCCAAATCGTACTATCTGTTCGATGGCTACGCTCATCTGTCTTCTGGTCTTGCTTGTGGTCTCGCTGGTCTCTCCGCTGGCATGGCCATTGGCATCGTTGGCGACGCCGGTGTTAGAGCAAATGCCCAACAGCCAAAGCTTTTTGTTGGGATGATTTTGATTCTCATCTTTGCCGAGGCATTGGCGTTGTATGGTCTTATTGTTGGCATCATCCTCTCTTCCCGCGCTGGCCAATCCAGAGCTGATTAG 768 0.5104 MHYYVLNIETRGVCSSFAIVFYTGLKRFFGGWAGLSVFSHTCYFQGGREGPFKKLPRGRAKKRRRKSNNNSNSNRSHCRLAEAKIQRKKERMVDFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03036 255 CDD ATP-synt_Vo_c_ATP6C_rpt2 179 246 - -
Vimu7g03036 255 MobiDBLite consensus disorder prediction 55 70 - -
Vimu7g03036 255 Pfam ATP synthase subunit C 187 245 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu7g03036 255 Pfam ATP synthase subunit C 107 166 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu7g03036 255 SUPERFAMILY F1F0 ATP synthase subunit C 104 167 IPR035921 -
Vimu7g03036 255 Gene3D - 101 252 IPR035921 -
Vimu7g03036 255 NCBIfam V-type ATPase subunit C 103 211 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vimu7g03036 255 PRINTS Vacuolar ATP synthase 16kDa subunit signature 224 247 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu7g03036 255 PRINTS Vacuolar ATP synthase 16kDa subunit signature 146 170 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu7g03036 255 PRINTS Vacuolar ATP synthase 16kDa subunit signature 197 223 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu7g03036 255 PRINTS Vacuolar ATP synthase 16kDa subunit signature 120 144 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu7g03036 255 MobiDBLite consensus disorder prediction 53 77 - -
Vimu7g03036 255 CDD ATP-synt_Vo_c_ATP6C_rpt1 103 170 - -
Vimu7g03036 255 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 93 251 - -
Vimu7g03036 255 FunFam V-type proton ATPase proteolipid subunit 101 252 - -
Vimu7g03036 255 SUPERFAMILY F1F0 ATP synthase subunit C 177 246 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03036 Vimu-Chr7 25578362 25580636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03036 92 255 Primary Pumps ATPases(2) AT2G16510 98.171 2.87e-109 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03036 K02155 - gmx:100779290 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03036 7 25578362 25580636 Vimu7g03036 7 25578362 25580636 PCT