Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03034 ATGCCTGTTCTTCTTCTACTCCTGGTGTTCTGCGCACCGCTCTTAACGTGCGCCGACCGCACCGCCGTTACTGTTGTGGAGATCCAAGCCTTGACATCCTTCAAGCTCAACCTCCACGACCCCGTCGGAGCTCTTGACGGTTGGGATCCCACGTCTCCGGCGGCACCGTGTGACTGGCGTGGAGTCGCATGCATGAACGGTCGAGTCACGGAGTTGCGTCTGCCTCGCCTTCAACTCGGTGGCAGACTCAGCGACCGTCTCTCCGAGTTGCGCATGCTACGCAAGATAAGCCTTCGCTCAAACAACTTAAACGGAACCGTTCCTTCGTCGCTCTCCAAATGCACGCTCTTACGGTCATTGTTCCTGCAGGAGAATTCGTTTACCGGCAACCTTCCGACGGAGATCGCCAACCTCACTGGTCTTCAGATTCTCAACGTCGCGCTGAACCGCCTCTCCGGCAGTATCCCCGGCCTTCTCCCTCTCGGCCTCAAAGCCCTCGACCTCTCGTCGAACGCCTTCTCTGGCGAGATTCCAAGCTCTTTGGCCAACCTCTATCAGCTTCAGTTGATAAACCTGTCGTATAACCAGTTGTCCGGCGAGATTCCGGCGAGCCTCGGGGAGCTTCAGCAGCTGCAGTACCTCTGGCTGGACCACAATCTCCTCGGAGGAACGCTTCCTTCTGCGCTCGCAAATTGCTCCGCGCTTCTGCATCTGAGCGTGGACGGAAACGCGCTTACCGGCGTGATTCCGTCGGCGATTTCGGCGCTTCCGAGACTTCAGGTGATGTCACTGTCTCAGAACAACTTCACCGGCTCCATTCCAGCTTCCGTTTTCTGCAACGGTTCTGTCCACGCGCCGTCGTTGCGGATTGTTCACCTTAGTTTCAACGGTTTCGTGGATTTCGTGGGGCCTGAGACGAGCACGTGTATAAGTGTTCTTCAGGTTTTGGATATTCAGCACAATCGGATACGAGGCACGTTTCCGTTGTGGTTGACCGACGTTACCACGTTGACCGTGCTTGATGTGTCCAATAATGCACTTTTTGGGGAAGTTCCGCCCCAAATAGGAAATCTTTTTAAGTTGGAGGTGTTGAAGATGGCTAATAATTCCTTCACCGGTACCATTCCGGTGGAACTGAAGAAATGTGGGTTCCTAAGCGTCGTTGATTTTGAAGGCAACGAGTTTGGCGGGGAAGTTCCTTCGTTTTTGGGTGATGTGACGGGGCTGAAGGTGCTCTCTCTCGGTGGGAACCACTTCTCTGGTTCGGTTCCGGTGAGTTTTGGAAACCTTTCATATCTTGAAATGTTGAGTTTGTGGGGTAACAGGTTGACTGGAAGTATGCCTGAGATGATAATGAGTTTGAACAATTTGACGATACTAGACCTTAGTGGAAACAAATTTACGGGTCAAGTTTATGCGAGTATTGGGAATTTGAATAAGTTAACGGTTCTCAATCTCAGTGGCAATGGCTTCTCTGGAAAAATTCCTTCCAGTTTGGGGAATCTTTTCAAGTTAACTACGCTTGACTTGAGCAAACAGAATCTTTCTGGTGAATTACCGCTTGAGCTCTCGGGATTGCCCAGTTTGCAAGTTGTTGCACTGCAGGAAAACAAGTTATCTGGTGATGTGCCTGAAGGGTTTAGTAGTTTGACGAGTTTGCAGTATGTTAATCTCAGTTCTAATGCCTTTTCCGGGTCCATTCCTGAAAATTATGGCTTTCTTCGTTCATTGCTTGTTCTTTCGTTGTCTGGTAATGACATTACAGGAGCAATCCCTTCGGAAATTGGAAATTGCTCTGGTATTGAAATTCTTGAGCTTGGATCAAACTCTCTGGTAGGTCGCATTCCTGCTGATCTCTCTCGTCTCACATTTTTGAGAGTGCTTGATTTGAGTGGAAACAATTTAACTGGGGATTTGCCTGAGGAAATCTCCAAATGCTCGGGGCTAACCACTTTGCTGGTGGATCACAACCATCTTTCCGGGGATATACCGGGGTCCTTGTGGAATCTAGCAAACCTGACAATGCTAGATCTCTCTGCTAACAACTTGAGTGGGAAAATTCCGAACAATCTTTCTATGATTTCGGGTTTAGTATTCTTAAATGTCTCAGGAAATAACTTGGACGGTGAGATACCACCAACATTGGGATCTCGGTTCAGTAACCCCGATGTATTCACAGATAATCCAGGTTTATGTGGGAAGCCATTGGATACGAAATGCGAAGATATAAATAATGGTAAGGACAGAAAGAAGATGATTGTGCTTGTGGTTGTCGTTGCTTGTGGAGCTTTTGTACTGGTTTTGTTTTGCTGCTTCTACGTGTTCAGTCTATTGAGATGGCGTAAAAGACTGAAACGGGGTGTATCGGGTGAAAAGAAGAAGAGTCCCGCTAGAGCCAGTTCTGGAACAAGTGGAGGTCGTAGCAGCAGTGAGAGTGGGGGACCAAAACTAGTGATGTTTAACACTAAAGTTACACTTGCTGAGACCATTGAAGCAACAAGACAATTCGACGAAGAGAACGTGCTGAGCAGAACAAGGTACGGATTAGTGTTCAAAGCCTGTTACAACGATGGAATGGTCCTCTCCATTCGCAGGCTCCAAGATGGATCATTGGATGAGAACATGTTTAGAAAAGAAGCCGAATCACTAGGCAAAGTGAAGCACCGAAATTTAACAGTTCTCAGAGGTTATTATGCTGGGCCACCTGACATGAGACTCCTAGTCTACGATTACATGCCCAATGGAAACCTCGCAACCCTCCTCCAAGAAGCTTCTCACCAAGATGGTCACGTTCTAAATTGGCCAATGCGACACCTCATTGCACTGGGCATTGCCCGTGGTTTAGGCTTCCTACACCAATCCTCAATGGTCCACGGCAACGTG 2883 0.486 MPVLLLLLVFCAPLLTCADRTAVTVVEIQALTSFKLNLHDPVGALDGWDPTSPAAPCDWRGVACMNGRVTELRLPRLQLGGRLSDRLSELRMLRKISLRSNNLNGTVPSSLSKCTLLRSLFLQENSFTGNLPTEIANLTGLQILNVALNRLSGSIPGLLPLGLKALDLSSNAFSGEIPSSLANLYQLQLINLSYNQLSGEIPASLGELQQLQYLWLDHNLLGGTLPSALANCSALLHLSVDGNALTGVIPSAISALPRLQVMSLSQNNFTGSIPASVFCNGSVHAPSLRIVHLSFNGFVDFVGPETSTCISVLQVLDIQHNRIRGTFPLWLTDVTTLTVLDVSNNALFGEVPPQIGNLFKLEVLKMANNSFTGTIPVELKKCGFLSVVDFEGNEFGGEVPSFLGDVTGLKVLSLGGNHFSGSVPVSFGNLSYLEMLSLWGNRLTGSMPEMIMSLNNLTILDLSGNKFTGQVYASIGNLNKLTVLNLSGNGFSGKIPSSLGNLFKLTTLDLSKQNLSGELPLELSGLPSLQVVALQENKLSGDVPEGFSSLTSLQYVNLSSNAFSGSIPENYGFLRSLLVLSLSGNDITGAIPSEIGNCSGIEILELGSNSLVGRIPADLSRLTFLRVLDLSGNNLTGDLPEEISKCSGLTTLLVDHNHLSGDIPGSLWNLANLTMLDLSANNLSGKIPNNLSMISGLVFLNVSGNNLDGEIPPTLGSRFSNPDVFTDNPGLCGKPLDTKCEDINNGKDRKKMIVLVVVVACGAFVLVLFCCFYVFSLLRWRKRLKRGVSGEKKKSPARASSGTSGGRSSSESGGPKLVMFNTKVTLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMVLSIRRLQDGSLDENMFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLATLLQEASHQDGHVLNWPMRHLIALGIARGLGFLHQSSMVHGNV 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03034 961 Gene3D Phosphorylase Kinase; domain 1 806 911 - -
Vimu7g03034 961 Gene3D Transferase(Phosphotransferase) domain 1 912 961 - -
Vimu7g03034 961 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 524 959 - -
Vimu7g03034 961 PRINTS Leucine-rich repeat signature 670 683 - -
Vimu7g03034 961 PRINTS Leucine-rich repeat signature 625 638 - -
Vimu7g03034 961 MobiDBLite consensus disorder prediction 796 816 - -
Vimu7g03034 961 SUPERFAMILY Protein kinase-like (PK-like) 825 960 IPR011009 -
Vimu7g03034 961 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Vimu7g03034 961 FunFam Uncharacterized protein 256 472 - -
Vimu7g03034 961 SMART LRR_typ_2 670 701 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 90 114 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 622 646 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 334 358 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 256 280 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 184 206 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 526 549 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 478 502 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 550 572 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 454 477 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 574 598 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 138 161 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 406 429 IPR003591 -
Vimu7g03034 961 SMART LRR_typ_2 208 232 IPR003591 -
Vimu7g03034 961 SUPERFAMILY L domain-like 27 330 - -
Vimu7g03034 961 Gene3D Ribonuclease Inhibitor 26 161 IPR032675 -
Vimu7g03034 961 MobiDBLite consensus disorder prediction 789 816 - -
Vimu7g03034 961 FunFam Leucine-rich receptor-like protein kinase family protein 473 569 - -
Vimu7g03034 961 Pfam Leucine Rich Repeat 480 502 IPR001611 GO:0005515
Vimu7g03034 961 SUPERFAMILY RNI-like 340 726 - -
Vimu7g03034 961 Gene3D Ribonuclease Inhibitor 162 279 IPR032675 -
Vimu7g03034 961 FunFam Putative LRR receptor-like serine/threonine-protein kinase 799 911 - -
Vimu7g03034 961 SMART LRR_sd22_2 622 651 - -
Vimu7g03034 961 SMART LRR_sd22_2 208 234 - -
Vimu7g03034 961 SMART LRR_sd22_2 454 480 - -
Vimu7g03034 961 SMART LRR_sd22_2 670 693 - -
Vimu7g03034 961 SMART LRR_sd22_2 334 360 - -
Vimu7g03034 961 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 625 740 - -
Vimu7g03034 961 Pfam Leucine rich repeat 576 635 IPR001611 GO:0005515
Vimu7g03034 961 Pfam Leucine rich repeat 163 221 IPR001611 GO:0005515
Vimu7g03034 961 Pfam Leucine rich repeat 408 467 IPR001611 GO:0005515
Vimu7g03034 961 Pfam Leucine rich repeat 504 562 IPR001611 GO:0005515
Vimu7g03034 961 Pfam Leucine rich repeat 648 707 IPR001611 GO:0005515
Vimu7g03034 961 ProSiteProfiles Protein kinase domain profile. 836 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g03034 961 FunFam Inactive leucine-rich repeat receptor-like protein kinase 160 251 - -
Vimu7g03034 961 Gene3D Ribonuclease Inhibitor 280 473 IPR032675 -
Vimu7g03034 961 Gene3D Ribonuclease Inhibitor 474 748 IPR032675 -
Vimu7g03034 961 FunFam Nuclear pore complex protein NUP107 24 159 - -
Vimu7g03034 961 Pfam Protein tyrosine and serine/threonine kinase 840 960 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03034 Vimu-Chr7 25565632 25568730 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03034 3 961 Receptor kinase-like Gene Family AT4G36180 66.151 0.0 1212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Vimu7g03034 PK_Tyr_Ser-Thr 1.3e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03034 - - gmx:100795838 1594.33