Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03027 ATGTTAGTTAATGACAAGAGATGTAAAACACATAAAAATGCTGATGTTCTAGTTCCGCAAAATAACCCAAATGCATATGCTGCAATAGATGTTCACAATCTTAACTTGATCTACTTGCGGCGATGTCTGATGGAGAATCTAACTGAAGATATTGAAAAGATTCACGAGAAGGTTGTTGGTTCATTTGTGCGGATAAGAATCTCGAGCAGTGATCAAAAACAAGATATGTATAGACTTGTCCAAGTTGAAGGAGATACCAATATATTTTCAAAATATCTTGGGTTTGATAGAAGAGAGAGGGGCTCTTTTTTTCCAAGAATTTCGAACAATGTCTTCAATGATGCAGGAGGCAAAACACAAGACTTGCCTGTTACCCGAGAACATGTTGGGAATATATGCACAGTAAAGAACTGTGACACAGCTATCGAGGATAGCACTAATACGGTTGTGAAATCAGAAGTGTCTAGTGTAGCAGTGGACATTTCACCATCACTTATCCCAGTGGAGATACAGCAGCCTCTTAATGAATTTTTGAATGATAGATCATGGAATTATCAAGATCCAACTGGGAAGGTTCAAGGGCCTTTTTCTATGTTGCAGCTGTACAAATGGAATGTAAGTGGAGGTTTTCCTCCAGATCTCAAAATATGGAGGATAGGTGAGAAACAGGATAACTCTATACTGTTAACGGATGCACTAAGTGTGAAGTGTTCCAAAAATGTGTCATTGCCATTCAACAACCCATTACTCTCTCTAGGGGTCAGTACATTGGATAATAAACATAATAGTCAGGATGCTGGGAAGAATGTAGTGAAGAATGGAATTTCTGCCGATGGGCAAATTATTGAACAGATCAAGGAACAAAAAGTGGATGATACCTCTACCCAGTCTGATGGTAAAGCTGAGCCTGTCAGGAGCAATGGATGGCTTGGGCCGCTGCATTTATACCCTTCATCATTGACAACTGCCATTACTGAGAAAATGAATGAAACTTCTGATAAATTAAGGAAAGATCATGGGATTGTGGGAAACTCTCAAGATAATGTAAATAATGGGCAGAGTAATAGTGGGCAGAGTTATCAGAAGCCATCAGATAGTGAAGAGAATGCAGGGCAATCTTCTGGACAGACCTGGAGACACCCTAATGTTAATAGCTCTTCGGATTGCCTGGTTGCCACATCAGCTCATGTATCGGATAAAAAAACAGTACCACATAAGCTGGGATTTGATTTGCATAATTCTCCTTCCCCTCCAGCATGTAATACATCATCTGGACAGACCTGGAGACCGCCTCATGTTAATAGCCCTTCCAATTGCTTGGTTACCACGTCAGCTCATGCCTCTGGTACAAAAACATCACCACATAAGCTGGGATTTGATTTGCATAATCCTCCCTCCCCTCCTGCATGTAATACATCATCTGGACAGACCTGGAGTCACCCTACTGTAAATAGTTCTTCTGATTGCTTGGTTAACACACCAGCTCATGTTTCTGGTACAAAAACATCACCACATAAACTGGGCTTTGATTTGCATGATCCTCCTTCCCCTCCAGCTTGTAATACATCTTCTGGACAGACTTGGAGACACTTTGATATAAATATTTCTACCAATTGCTTAGTTACCTCATCAACTCATGTTTCTGGTGTAAAAACATCACCGCATAAGTTGGGATTTGATTTGCATAATCCTCCTTCCCCTCCAACTTGTAATACATCAACATGGCAGGCAATCATTGGCGAGCCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAAGCAATGGAGTCACTTGGGGGCTTGGAATCTCCCACTTCAATCATGAAATGTGGCGATGATTTGACTGAAGGTTCTAAAAACGATTGTCTCAGCTTTGTTGCAGACCTTGGCCCAATGCTTGATGCAGGTAAAGGTGATGCACTGAGCTCCACTGGAGATTTAAACTTACCATCTCAACCGACAGCCGCAGAGGAACCATTACGGCAGGCAGATGTACATCACCATCATCAAAGAATTTCTGATGAGCATTCTTCAAGAAGTTCTAAAGTTGAGGTGGGTACAAAAAACGCAAGTGTCTCGGGTAATCAATGGGATTCAGGCTCAGAAAATTCACCTGTTGTTCCATCTCCTGCAACCTTGGGCCTGGCTATAGACACCACTTGGAGACTTGGGCTAGATAGTACACCTTTGGGGTGGAGTGGAATAGATCAAGGAAATACAAATGTGGGTTGGGGAGTAGGACAAACAACAGTGCAGGAAACCAGGAGCTCAAATTCATACACTTCTGTAGTAACTCCAGGTTTTGGGGATAACCAAACAAGATTTGGCAGTGATCGTTTTTCTGTGCCTAGAGATCGGGGTTCTCAAGGTCATGCTAGGGAATCAGGTTTTGGTAGAAGCAGAATTGCATTTAACAGGCAACCGTCGTATGGTGTTGGGAATGGAGGCTCATATAGGCCTCTGCCCAAAGGGCAGCGAGTTTGTAAATTTTATGAAAGCGGGTACTGTAAGAAGGGGGCATCCTGTGATTACTGGCACCCATGA 2556 0.4229 MLVNDKRCKTHKNADVLVPQNNPNAYAAIDVHNLNLIYLRRCLMENLTEDIEKIHEKVVGSFVRIRISSSDQKQDMYRLVQVEGDTNIFSKYLGFDRRERGSFFPRISNNVFNDAGGKTQDLPVTREHVGNICTVKNCDTAIEDSTNTVVKSEVSSVAVDISPSLIPVEIQQPLNEFLNDRSWNYQDPTGKVQGPFSMLQLYKWNVSGGFPPDLKIWRIGEKQDNSILLTDALSVKCSKNVSLPFNNPLLSLGVSTLDNKHNSQDAGKNVVKNGISADGQIIEQIKEQKVDDTSTQSDGKAEPVRSNGWLGPLHLYPSSLTTAITEKMNETSDKLRKDHGIVGNSQDNVNNGQSNSGQSYQKPSDSEENAGQSSGQTWRHPNVNSSSDCLVATSAHVSDKKTVPHKLGFDLHNSPSPPACNTSSGQTWRPPHVNSPSNCLVTTSAHASGTKTSPHKLGFDLHNPPSPPACNTSSGQTWSHPTVNSSSDCLVNTPAHVSGTKTSPHKLGFDLHDPPSPPACNTSSGQTWRHFDINISTNCLVTSSTHVSGVKTSPHKLGFDLHNPPSPPTCNTSTWQAIIGEPNDFDESVSDLLAEVEAMESLGGLESPTSIMKCGDDLTEGSKNDCLSFVADLGPMLDAGKGDALSSTGDLNLPSQPTAAEEPLRQADVHHHHQRISDEHSSRSSKVEVGTKNASVSGNQWDSGSENSPVVPSPATLGLAIDTTWRLGLDSTPLGWSGIDQGNTNVGWGVGQTTVQETRSSNSYTSVVTPGFGDNQTRFGSDRFSVPRDRGSQGHARESGFGRSRIAFNRQPSYGVGNGGSYRPLPKGQRVCKFYESGYCKKGASCDYWHP 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03027 851 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 89 851 - -
Vimu7g03027 851 ProSiteProfiles GYF domain profile. 180 234 IPR003169 GO:0005515
Vimu7g03027 851 MobiDBLite consensus disorder prediction 286 312 - -
Vimu7g03027 851 Pfam Plus-3 domain 33 85 IPR004343 GO:0003677
Vimu7g03027 851 SUPERFAMILY CCCH zinc finger 826 850 IPR036855 GO:0046872
Vimu7g03027 851 SMART gyf_5 181 236 IPR003169 GO:0005515
Vimu7g03027 851 MobiDBLite consensus disorder prediction 664 689 - -
Vimu7g03027 851 ProSiteProfiles Zinc finger C3H1-type profile. 826 851 IPR000571 GO:0046872
Vimu7g03027 851 SMART rtf1 28 118 IPR004343 GO:0003677
Vimu7g03027 851 Gene3D - 182 238 IPR035445 -
Vimu7g03027 851 MobiDBLite consensus disorder prediction 338 385 - -
Vimu7g03027 851 MobiDBLite consensus disorder prediction 664 686 - -
Vimu7g03027 851 Pfam GYF domain 183 224 IPR003169 GO:0005515
Vimu7g03027 851 MobiDBLite consensus disorder prediction 343 385 - -
Vimu7g03027 851 SUPERFAMILY GYF domain 173 234 IPR035445 -
Vimu7g03027 851 Gene3D - 29 144 IPR036128 GO:0003677
Vimu7g03027 851 SUPERFAMILY Plus3-like 29 86 IPR036128 GO:0003677
Vimu7g03027 851 CDD GYF 180 233 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03027 Vimu-Chr7 25518931 25523284 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu7g03027 Plus-3 4.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03027 - - vum:124834891 1525.38