Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03023 ATGGAGTGCATGGAGGCAGCTTTGAAAAGCAATTTGAGGAAAGAAATGATGGTACAACTCAGTCCAGAAACCTTCATGGAGGAGTTCAGTGTGCAAAACGGAACCACTTGCGACGACTTTTTCGTCGACGGCCTCCTTGACTTCTCGCACGTCGATGAAGAACCAGAACAACAGCACAACGAACAACAAGACTCGGTTTCTCTATCCCTTCAGAAAGAAAACGCAAGCCAAGAGCCCTGTGCTTTCAAACCCGATTATTCCTCTGTGCCCACCACCGAGCTCACCGTTCTGGCGGATGACGTGGCGGACTTTGAGTGGTTGTCTCATTTCGTGGAGGATTCCTTCTCGGAATTCTCTGCGGCGCTCCCCACCGTAACGGAGGCCAACCCGACGGGCCATACGGCAAAAGAGCCGAAGCCAGAACCGGAAAACCCGGTTTTCACCTTCAAAACCCCGGTTCAGACCAAGGCGAGAAGCAAGCGAAGCAGGAACGGTGTTCGTGTTTGGCCACTCGGTTCTCCTTCCTTCACCGAATCTTCCTCGAGCTCCACCACCACCACTTCATCATCTTCCTCCTCCTCCCCCTCCAGCCCCTTGCTAATTTACACCAACTTCCCCCGTAGCCTCGACCACGTCAGCTCCGAGCCCAAACCAAATAAACCGAAGAAAAAACACTCTTCCGACAGTGCGGGCACCCTGGCGCCGCGACGGTGCAGTCACTGCGGCGTGCAGAAAACCCCTCAGTGGCGAACTGGGCCCCTCGGCCCAAAAACACTCTGTAACGCATGCGGGGTGCGGTTCAAGTCGGGACGGCTCTTACCCGAATATAGGCCCGCTTGCAGCCCAACATTCTCCAGCGAATTACACTCAAACCATCATCGTAAAGTACTCGAGATGCGGCAGAAGAAGGAGATGATGACTGGGATTGAAAATGGTTTTACCCCTGCTCCCAGGCATGAAGATTGTGAAGGAAAGAAGCAAAAAACGCAGAGAAGTAGTTTGAAAAGTGCAGAAAGAATGATGGTGGCGAAATGGTTGCCATCATCATTCTTAAATTTGAAGTTGATTTGGATTTTTATGGGACACTAG 1089 0.5197 MECMEAALKSNLRKEMMVQLSPETFMEEFSVQNGTTCDDFFVDGLLDFSHVDEEPEQQHNEQQDSVSLSLQKENASQEPCAFKPDYSSVPTTELTVLADDVADFEWLSHFVEDSFSEFSAALPTVTEANPTGHTAKEPKPEPENPVFTFKTPVQTKARSKRSRNGVRVWPLGSPSFTESSSSSTTTTSSSSSSSPSSPLLIYTNFPRSLDHVSSEPKPNKPKKKHSSDSAGTLAPRRCSHCGVQKTPQWRTGPLGPKTLCNACGVRFKSGRLLPEYRPACSPTFSSELHSNHHRKVLEMRQKKEMMTGIENGFTPAPRHEDCEGKKQKTQRSSLKSAERMMVAKWLPSSFLNLKLIWIFMGH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03023 362 MobiDBLite consensus disorder prediction 312 334 - -
Vimu7g03023 362 MobiDBLite consensus disorder prediction 316 333 - -
Vimu7g03023 362 MobiDBLite consensus disorder prediction 53 74 - -
Vimu7g03023 362 Pfam GATA zinc finger 238 272 IPR000679 GO:0006355|GO:0043565
Vimu7g03023 362 CDD ZnF_GATA 237 285 IPR000679 GO:0006355|GO:0043565
Vimu7g03023 362 PANTHER GATA TRANSCRIPTION FACTOR 33 305 - -
Vimu7g03023 362 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Vimu7g03023 362 Gene3D - 232 307 IPR013088 GO:0006355|GO:0008270
Vimu7g03023 362 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 234 294 - -
Vimu7g03023 362 MobiDBLite consensus disorder prediction 213 230 - -
Vimu7g03023 362 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Vimu7g03023 362 FunFam GATA transcription factor 227 312 - -
Vimu7g03023 362 SMART GATA_3 232 286 IPR000679 GO:0006355|GO:0043565
Vimu7g03023 362 MobiDBLite consensus disorder prediction 173 210 - -
Vimu7g03023 362 MobiDBLite consensus disorder prediction 127 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03023 Vimu-Chr7 25459504 25460983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03023 5 313 C2C2-Gata Transcription Factor Family AT5G66320 47.774 1.79e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu7g03023 GATA 1.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03023 - - var:108335072 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03023 7 25459504 25460983 Vimu7g03023 7 25459504 25460983 ECH
Vimu7g03023 7 25459504 25460983 Vimu7g03023 7 25459504 25460983 PCT