Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g03021 ATGGGTCGCGGCAAAATTGAGATAAAGTTGATTGAGAACCCCACCAACAGGCAAGTCACCTACTCCAAGCGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTCTGTGATGCCAAGGTTTCACTCATCATGTTCTCAAAAAACAACAAGATGCATGAATATATTAGTCCTGGCCTTACCACAAAAAAGATCGTTGATCAGTATCAGAAGACTTTGGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTTGAGAACTTGAAGAAGCTGAAAGATATTAACAACAAACTCAGGAGACAGATCAGGCACAGGATTGGTGAGGGTTTGGATTTGGACGAACTGAGCTTCCAGCAACTGCGAACTCTTGAAGAGGATATGGTTGCTTCCATAGGGAAAATACGCGAGCGAAAGTTCCACGTGATCAAAACTCGGACTGATACCTGTAGGAAAAAGGTTAAAAGCTTGGAGCAGATGAATGGAAATCTTCTGCTTGAACTTGTAAGAACTTCGAATATGTCGGAAAAGTGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGACGAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCCACCCTCTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCCCTCACATCATCAACATCACCACCATGGAGAAGAACCCTTTAAAACTGACGATCTACGCCTTGCTTAA 729 0.4362 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKIVDQYQKTLGDIDLWRSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLDLDELSFQQLRTLEEDMVASIGKIRERKFHVIKTRTDTCRKKVKSLEQMNGNLLLELVRTSNMSEKCVIHPQFLLHDEGDEESAVALANGASTLYAFCQHHTHLNLPSHHQHHHHGEEPFKTDDLRLA 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g03021 242 Coils Coil 85 105 - -
Vimu7g03021 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 MobiDBLite consensus disorder prediction 221 242 - -
Vimu7g03021 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Vimu7g03021 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 Coils Coil 241 242 - -
Vimu7g03021 242 MobiDBLite consensus disorder prediction 225 242 - -
Vimu7g03021 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Vimu7g03021 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vimu7g03021 242 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vimu7g03021 242 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Vimu7g03021 242 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Vimu7g03021 242 ProSiteProfiles K-box domain profile. 85 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g03021 Vimu-Chr7 25443810 25445897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g03021 1 230 MADS-box Gene Family AT3G54340 49.138 6.96e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vimu7g03021 K-box 8.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g03021 K09264 - gmx:100784496 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g03021 7 25443810 25445897 Vimu7g03021 7 25443810 25445897 ECH