Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02998 ATGGTATCCAACATGCGCAAACATCTTCCTTCGTTTGGATCAGCTTCGTCGTGGTTCGAGGTGTACGCTACGTTCTCCACATTCACCATGCTCCTCAGAACTGCATTCAATGATCTCATACCCCACCAAATTCGATCCTTTCTTGTCTCAAAGCTAGAAGCCTTTTTCCATAGCCAACCAAATAATCAAATATCTCTCCGAATCAACGAATTCTGGCACGAACAGTACGATGGAAATGAACTTTTCCTTGCAGCGCAGGAGTACCTCCCCACCAGGATTACCAGCACCTACAAATCACTCAAAGTTGGTAAACTAGAAAACGAAAAGCACCTGAATCTAGCAGTGGATCCAAGCCAAGAGGTGGTGGACGAGTTTGAAGGCACCAAGTTCAGTTGGAAGCTGGATGAGAATTCAGACGAAAACTCGCGCCATTCCTGGAAGCAAGCCTTTGTACTGACCTTCGAGGAGAGGAACAGAGAGAGAGTGTTGGATCGGTATATCCCACACGTCCTTAAAACATACGAGGCCATGAAAAGTGAGAAGAGGATTCTGGAAATCCATTCAAGGAGGAGTTATGAATGGACCCACAGGGAGTTATCTCATCCTGCCACATTCGACACGCTGGCCTTGGATCCCGAGTTGAAGCAAGCTATAGTTGATGATTTAGATCGGTTCAAGAAGAGGAAGGAATTCTACAAGAAGGTGGGAAAGCCTTGGAAACGTGGGTACTTGCTGTATGGACCTCCGGGAACAGGAAAATCTAGCCTCATTGCAGCCATTGCCAATCACTTGAAATTCGACGTGTATGATTTGGATTTATCTTATATTACTTCTGATTCAGACCTGATGGAAGCCATGAGGGATATATCTCGCAGTTCCATCTTGGTGATTGAAGACATAGATTGCAACAAAGAGGTGCATGATCGATCAAAACCAAAACAAGATTCAGATATTGAGAAGGGTAGTGGGAAGTTTAATCTGTCGAATTTGCTGAATTTCGTGGATGGTTTAAGGTCAGGCGGCGGAGAGGGGTGGGTTACAATATTCACCACTAACCACAAAGAGAAAATAGACCCGGCGTTGCTGCGCCCTGGTCGCATGGACATGCACATTCACTTGTCCTTTCTCAGAGGTAAGGCGTTTCCGATCATGGCTTCTAATTATTTGGGTATTGAAGGAGATCATCCAGTGGTTGAAGAGATCAAAGGAATGTTGGAGAAAACACAAGTCACCCCTGCAGTTGTAGGAGAGCATCTCATCAGAAATGAGGATCCTGACCTTGCTTTGGAAGCACTTGTTCAATTTCTCAAACAACAGATCAAGGAGGACACCCAATGA 1338 0.4522 MVSNMRKHLPSFGSASSWFEVYATFSTFTMLLRTAFNDLIPHQIRSFLVSKLEAFFHSQPNNQISLRINEFWHEQYDGNELFLAAQEYLPTRITSTYKSLKVGKLENEKHLNLAVDPSQEVVDEFEGTKFSWKLDENSDENSRHSWKQAFVLTFEERNRERVLDRYIPHVLKTYEAMKSEKRILEIHSRRSYEWTHRELSHPATFDTLALDPELKQAIVDDLDRFKKRKEFYKKVGKPWKRGYLLYGPPGTGKSSLIAAIANHLKFDVYDLDLSYITSDSDLMEAMRDISRSSILVIEDIDCNKEVHDRSKPKQDSDIEKGSGKFNLSNLLNFVDGLRSGGGEGWVTIFTTNHKEKIDPALLRPGRMDMHIHLSFLRGKAFPIMASNYLGIEGDHPVVEEIKGMLEKTQVTPAVVGEHLIRNEDPDLALEALVQFLKQQIKEDTQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02998 445 CDD RecA-like_BCS1 218 373 - -
Vimu7g02998 445 PANTHER BCS1 AAA-TYPE ATPASE 23 439 - -
Vimu7g02998 445 SMART AAA_5 239 377 IPR003593 GO:0016887
Vimu7g02998 445 Pfam ATPase family associated with various cellular activities (AAA) 244 373 IPR003959 GO:0005524|GO:0016887
Vimu7g02998 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 422 IPR027417 -
Vimu7g02998 445 Gene3D - 193 371 IPR027417 -
Vimu7g02998 445 Gene3D - 372 444 - -
Vimu7g02998 445 Pfam Domain associated at C-terminal with AAA 40 134 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02998 Vimu-Chr7 25255551 25257312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02998 217 373 Calmodulin-binding Proteins AT3G56690 30.303 5.62e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02998 - K08900 gmx:100789094 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02998 7 25255551 25257312 Vimu7g02998 7 25255551 25257312 ECH