Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02997 ATGAGACCTTCTGTGGGGAGTTTCTCTTCCTCCTTCACAAATGTTCGTTCTGCCTCGTCATGGTTCGAGTTGTATGCAGCTTTCTCCACATTCATCATGCTTCTAAGAAGCGCAATCAACGAGCTCATACCCCAACAAGTTCGTTCTTTTGTACACTCCAAACTCAAAGCTTTCTTCTCAAACCGTCAAAAAAGCAACGTTGTCTCACTTCAGGTTACTGAACTTTGGGATGGCCACACCAACCAACTCTTCCAAGCCGTCCAAGAGTATCTCCCGGCTAGGATCACCCACTCTTACAAATCCCTCAAGGTTGGGAAAATTTCAAAGCACAAGAACATAGTAATGGCAGTAGATGGAAATCAGAACGTGGTGGATGAGTTTGAAGGCATCAAGCTCAAATGGAAGCTGGTTGAACAAAACTCCCAAAAAGAATCTGATGATCGCGACCCTATTCGTCCTCGCAAGTTACCTAGTTTCCAGAGGGAGTCCTTTACTCTAACCTTTGATGAGAAGCATAGAGATGTGGTCATGAACAAGTATCTCGTACACGTTCTGAACGAGTACCAGGAGATGCAAGCAAAACAGAGAACCATCAAGATCCATTCCTTCGGTGGTGGAAGATGTTGGCAGAAAAGCGACTTGACTCATCCGGCGTCGTTCCAGTCGCTTGCATTGGATCCAGAGCAAAAACAGGGAATCATTGATGATTTGGACCGGTTTTTGCGGAGGAAGGAGCTGTACAAGAAGGTGGGGAAGCCTTGGAAACGTGGCTACCTCTTGTATGGTCCCCCAGGAACAGGAAAATCTAGCCTTATTGCTGCCATGGCCGACCACTTGAAGTTTGATGTGTATGATCTGGAACTAACCTCTGTGTTTTCTAACTCAGACCTCATGCGGACCCTGAAGGAGACAGCTAACCGCTCCATCATCGTCATCGAAGACATTGACTGCAACAGAGAGGTGCATGTTCGACCAAAACCAAAAGACTTTTCAGATTCCGATTCAGACGATGACCACAAGCATGTCATGATTAAGACAAGCAGGTTTACTCTGTCGGGTCTGCTTAACTATATGGATGGGTTATGGTCGAGTGGTGGAGAGGAGCGGATTTTGATCTTCACCACCAACCACAGAGAAAGAATCGACCCTGCGTTGCTGCGACCTGGTCGTATGGACATGCACATTCACTTGTCCTTCCTCAGAAGCAAGGCATTTCGAATTCTAGCTTCCAATTACTTAGGCGTTGAAGGAGATCATCCACTTTTTGAACAAATTGATGATCTGTTGGAGAAAATAGACGTCACCCCTGCAGTGGTAGCGGAGCAACTAATGAGACATGAGGATCCTGACGTTTGTTTGGAAGCACTTGTTCAATTTCTCAAACAAAAGGCCAAGGAAGCCTAA 1404 0.4608 MRPSVGSFSSSFTNVRSASSWFELYAAFSTFIMLLRSAINELIPQQVRSFVHSKLKAFFSNRQKSNVVSLQVTELWDGHTNQLFQAVQEYLPARITHSYKSLKVGKISKHKNIVMAVDGNQNVVDEFEGIKLKWKLVEQNSQKESDDRDPIRPRKLPSFQRESFTLTFDEKHRDVVMNKYLVHVLNEYQEMQAKQRTIKIHSFGGGRCWQKSDLTHPASFQSLALDPEQKQGIIDDLDRFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAMADHLKFDVYDLELTSVFSNSDLMRTLKETANRSIIVIEDIDCNREVHVRPKPKDFSDSDSDDDHKHVMIKTSRFTLSGLLNYMDGLWSSGGEERILIFTTNHRERIDPALLRPGRMDMHIHLSFLRSKAFRILASNYLGVEGDHPLFEQIDDLLEKIDVTPAVVAEQLMRHEDPDVCLEALVQFLKQKAKEA 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02997 467 PANTHER BCS1 AAA-TYPE ATPASE 26 465 - -
Vimu7g02997 467 SMART AAA_5 254 401 IPR003593 GO:0016887
Vimu7g02997 467 Gene3D - 396 466 - -
Vimu7g02997 467 Pfam ATPase family associated with various cellular activities (AAA) 259 397 IPR003959 GO:0005524|GO:0016887
Vimu7g02997 467 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 448 IPR027417 -
Vimu7g02997 467 ProSitePatterns AAA-protein family signature. 369 387 IPR003960 GO:0005524|GO:0016887
Vimu7g02997 467 Pfam Domain associated at C-terminal with AAA 43 137 IPR025753 -
Vimu7g02997 467 CDD RecA-like_BCS1 233 397 - -
Vimu7g02997 467 Gene3D - 210 395 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02997 Vimu-Chr7 25243087 25244602 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02997 256 397 Calmodulin-binding Proteins AT3G56690 29.333 5.66e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02997 - K08900 gmx:100787726 701.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02997 7 25243087 25244602 Vimu7g02997 7 25243087 25244602 ECH