Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02981 ATGGCTCAGTCACCGTCTTATTATAACCGATTTCCTCAGACTCCAAACTCAACTAAGAAGGGACGTAGTGGCTATGAGCCATCGGACACCGAGACCGAGTGGCAAGAGATTCCTCGCCACGAACGAGAAAGAAGAAACTTCACTTTACAACGGAACAAGAGCCCCATGACACTACACAGGAGGCACCCTTCCAGGGTTGAACATGAAATCTCATCAGCTTCTACAACTTCAGCTCCACGTAGAAGACACAATAGCAAATCACCCTATAAGCTCCGCGTAGCAGAAGATGTTGCTGCTTCATCATCGCCCCTAACAGGTTTGGATACACGCAGAAATATCAGTCCCTTGCCAAGACCTGACCTTGGAAGAACTGTGTCCCCTTTCAGGGAGCAAAGAACTGAGAAGCCACACTACAAGAGATCAGTGACTGCTCCCAGGTTGAGGATTCAAGAGAGCACCCATGGAGGGATAATCAATGACACTGTTCTACAGCAAAGAGAAGTTTCTCCTTTCAAAGCGCCTTCGGCTGGAAAAATCAACGAAATGATAGCACAGGTGAAGCTATCTAATGATCCCAGAAGTGATTATTCATCAGTGCTTGAAAGCACTGATTCCTTTCAACCCGGTGACCTTTTCTTTTCTCGTGAATGCAATGTCTTGCAAGGGAGGAATTCTTCGTTGCCGAAAGGCATCCAACAGAGTGAGTATTTCAGTCCAATGCCAACGGTGAACTCCACGAGAACACCATCTGAAAGCAAAGGAAATAATGGTGATCTTAACATGAATATGAATATTTTGTCTCAATCAACCACGGGTTTGAGTTCTGCTGCCACGAGTAGAAAGGGCAGTGTCACTGGTAAGACAAGTAGTGTAACAAGCGAGGGTAGTGGAAAGACGACCGCAAGCATGAGGAAATTCACAGCTAACAGAAAAAAGAACCAGAAAGATACATGGTTTGCTTGCATGAGAACAGGTAACTGTAGAACCACTAGAAAATCTCCTGAACGTCGACCCATTGACGAATCTTCTTACATTGAGAGAGCAGTGGTAGTGGAAAGCCTCCCACAATTCTTGGCAGATAAGCACCAACCTGCTTCACTCAATGGCTTCATTTGCAACAGACAAGAAGCTCAACTTCTGAAGGAATTGGTGTCTCATGGCTCTTGCCCTCATATTTTGCTCAAAGGACCCTCTGGTTCCGGGAAAAGAGAGCTAGCAATGGCTCTTCTTAGAGAAATATATGGTGATGCATGTTATAATCTGTCTCATGATTTAAGACACTTCCCTATTCAGGACCAAAGGCTTAAGAAAGTCTCTGTACCCATAACATCCAGTCCTCATCACATGGAGCTTGATGTAAATTCAGAACCAAATGCTAAATATGCTTTAATGGGATTAATCAAAGAAATAAGCAATATATATGCTATTGCCCCTGAAGTAAGCAATATTAATTTCAAGTCAGATTTTAAAGTAATAGTTCTTTATGATGTCGACAAAGCTGTAGATAACATTCAGCACATTATCAAATGGATAGTAGACCGCTATTCTGATATATGCAAATTAGTACTCTGCTGTGAAGATGATGCAGACATCATTGAAGCTGTTAAAAATCGGTTCAAAACTGTACAAGTTGATGCTCCTCAAACTCACGAAGTTGTTGAGGTTCTTATGCAGATAGCAAAGAATGAGAAATTTGATCTGTCCATGAACTTTGCTGCGAAGATTGCTACAAAATCTAAGCAGAACCTCAGAAAAGCAATCATGGCTTTGGAAGCATGCAAAGCACACAACTATCCATTTTCAGAAGAACAACCAATTTCAGTTGTATGGGAGGAGATCGTAATAGAAGTTGCCACAGAGATCCTAGCTGATCCATCATATTCACGGCAAGAATTTCTTTATGATATCTTACTCTCAGTTCGAGGGAAATTTCAAATGCTTCTCTTGGATTTTGTCCAGCCGAAATTGATTCTCCTGAAACTCGTAGAACATCTCCTAAAAAGAATTGATGCCAGCTTAAAGAGGGAGCTATATTACTGGCATGCCTATTATGACAGAAGACTCCCACCAGGAATAACAGCTTTACTAAAGTTAGAAGGTAAGGCAAAATCACCCTTCTAA 2121 0.4206 MAQSPSYYNRFPQTPNSTKKGRSGYEPSDTETEWQEIPRHERERRNFTLQRNKSPMTLHRRHPSRVEHEISSASTTSAPRRRHNSKSPYKLRVAEDVAASSSPLTGLDTRRNISPLPRPDLGRTVSPFREQRTEKPHYKRSVTAPRLRIQESTHGGIINDTVLQQREVSPFKAPSAGKINEMIAQVKLSNDPRSDYSSVLESTDSFQPGDLFFSRECNVLQGRNSSLPKGIQQSEYFSPMPTVNSTRTPSESKGNNGDLNMNMNILSQSTTGLSSAATSRKGSVTGKTSSVTSEGSGKTTASMRKFTANRKKNQKDTWFACMRTGNCRTTRKSPERRPIDESSYIERAVVVESLPQFLADKHQPASLNGFICNRQEAQLLKELVSHGSCPHILLKGPSGSGKRELAMALLREIYGDACYNLSHDLRHFPIQDQRLKKVSVPITSSPHHMELDVNSEPNAKYALMGLIKEISNIYAIAPEVSNINFKSDFKVIVLYDVDKAVDNIQHIIKWIVDRYSDICKLVLCCEDDADIIEAVKNRFKTVQVDAPQTHEVVEVLMQIAKNEKFDLSMNFAAKIATKSKQNLRKAIMALEACKAHNYPFSEEQPISVVWEEIVIEVATEILADPSYSRQEFLYDILLSVRGKFQMLLLDFVQPKLILLKLVEHLLKRIDASLKRELYYWHAYYDRRLPPGITALLKLEGKAKSPF 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02981 706 Gene3D - 356 547 IPR027417 -
Vimu7g02981 706 Gene3D - 609 704 - -
Vimu7g02981 706 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 359 698 - -
Vimu7g02981 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 595 IPR027417 -
Vimu7g02981 706 Gene3D - 549 606 - -
Vimu7g02981 706 MobiDBLite consensus disorder prediction 1 140 - -
Vimu7g02981 706 MobiDBLite consensus disorder prediction 230 257 - -
Vimu7g02981 706 MobiDBLite consensus disorder prediction 24 49 - -
Vimu7g02981 706 FunFam Replication factor C subunit 3 356 547 - -
Vimu7g02981 706 MobiDBLite consensus disorder prediction 270 302 - -
Vimu7g02981 706 FunFam replication factor C subunit 3 548 606 - -
Vimu7g02981 706 MobiDBLite consensus disorder prediction 1 23 - -
Vimu7g02981 706 MobiDBLite consensus disorder prediction 125 140 - -
Vimu7g02981 706 SUPERFAMILY post-AAA+ oligomerization domain-like 609 700 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02981 Vimu-Chr7 25131216 25134781 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02981 359 700 Core DNA Replication Machinery Family AT5G27740 38.150 2.45e-70 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02981 K10756 - gmx:100795321 1160.59