Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02970 ATGGCGGTTCAGGATGAGCATGACCCGATGCTCATGGTGCTTCCTTCTCTCTCTCCACCCAACACCTACCAAGCCGTCGTCATCGGTGGCACCTTTGACCGATTGCATGACGGCCACCGTCTCTTCCTCACTGCAGCGGCCGAGGTGGCAAAGGGCCGGATTGTAATCGGAGTTTGCGACGGTCCTATGCTGGCAAAGAAACAGTTTGCTGAACTGATACAGCCAGTTGAAGAAAGGATAAATAATGTCAAAAATTTCATTAAGTCTATCAAGCCAGATTTAGAAGTGCAAGCTGTACCAATCACAGACCCCTTCGGCCCTTCCATCGTAGATGAAAATTTAGAGGTTGTGATTGTGAGCAAAGAAACATTACCGGGAGGATTGGCAATAAACAGAAAAAGAGCTGAAAGAGGCCTTTCACTGTTGAAGATTGAAGTTGTGGATTTGCTTTCTGGAGAATCAGGTGGGATTTTGCAAAACTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACAGAAGGACCGTGAAGGCGATCTTGACATTGAGGCAGGGAAACTCTACCCCACGGAAGACCGCAGCCTCTCTCAGTTCTTTCAAGAAGTTGAAGCGATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTATTTGATCTTCAGCAACTCAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTGCTTCGTGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGAAAAGCTTGAGGTTCTTGACAAATCCAACACGGTCAACCATAGTATGTCGGATTCCTACAAAGAGGGGAGCCCAATTTACAGGACCAGAATTTCTGTCACAAATGGTTTGAGGGTCAAGCTTAGGGCCATGATGAATGATTTTCAGTCATTGAGAGACCAAATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTATACAGCCACGGGTGAGGTTCCCACTGAAGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCAGAATTGGACACTCAAGTTAGGCATGAGGCTGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAGAGTGGATAACATTGAGGATAATGTGGCTAACGCGGGTAACTTCATCCATGGTGGAACTAATAGTCTCTACTATGCCAACCAGATGAAGAAGAAGAACAGAAAGTGGGTCTGTTGGGTTTTCGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 1386 0.4574 MAVQDEHDPMLMVLPSLSPPNTYQAVVIGGTFDRLHDGHRLFLTAAAEVAKGRIVIGVCDGPMLAKKQFAELIQPVEERINNVKNFIKSIKPDLEVQAVPITDPFGPSIVDENLEVVIVSKETLPGGLAINRKRAERGLSLLKIEVVDLLSGESGGILQNFAKMNDLMTKSFLSYVELKKQAQKDREGDLDIEAGKLYPTEDRSLSQFFQEVEAIKVEMEEITNLLFDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKEKLEVLDKSNTVNHSMSDSYKEGSPIYRTRISVTNGLRVKLRAMMNDFQSLRDQILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDAELDTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGERVDNIEDNVANAGNFIHGGTNSLYYANQMKKKNRKWVCWVFAVGLIILLVCIVAMLSS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02970 461 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 202 333 - -
Vimu7g02970 461 PANTHER SYNTAXIN 203 450 IPR045242 -
Vimu7g02970 461 CDD PPAT_CoAS 26 153 - -
Vimu7g02970 461 SMART tSNARE_6 362 429 IPR000727 -
Vimu7g02970 461 Gene3D HUPs 25 187 IPR014729 -
Vimu7g02970 461 CDD SynN 205 355 IPR006011 GO:0016020
Vimu7g02970 461 Pfam Syntaxin 207 402 IPR006011 GO:0016020
Vimu7g02970 461 Pfam Cytidylyltransferase-like 28 92 IPR004821 GO:0003824|GO:0009058
Vimu7g02970 461 SUPERFAMILY Nucleotidylyl transferase 25 133 - -
Vimu7g02970 461 Pfam SNARE domain 405 453 IPR000727 -
Vimu7g02970 461 Coils Coil 215 235 - -
Vimu7g02970 461 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 367 429 IPR000727 -
Vimu7g02970 461 SMART SynN_4 200 327 IPR006011 GO:0016020
Vimu7g02970 461 FunFam Bifunctional coenzyme A synthase 25 167 - -
Vimu7g02970 461 CDD SNARE_syntaxin1-like 369 426 - -
Vimu7g02970 461 Gene3D - 200 331 - -
Vimu7g02970 461 Gene3D - 363 460 - -
Vimu7g02970 461 NCBIfam cytidyltransferase-like domain 26 90 IPR004821 GO:0003824|GO:0009058
Vimu7g02970 461 SUPERFAMILY t-snare proteins 203 422 IPR010989 GO:0016020|GO:0016192
Vimu7g02970 461 FunFam Syntaxin 132 362 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02970 Vimu-Chr7 25017832 25023525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02970 164 461 SNARE and Associated Proteins AT2G18260 59.935 3.90e-128 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02970 K08486 - csav:115714478 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02970 7 25017832 25023525 Vimu7g02970 7 25017832 25023525 ECH