Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02963 ATGAGAGATGGGATTGGCAACATGTCAAAGCGAGGTGTGGAGAGCAGGCGTTGGAATGGTCGGACAAAGTCACATGTTGCTCCAGATATCACTCTAACTTCACTTGAACCCATTCAGCAAGGGCAGTGGGCGCATTTACCCCCTGAGTTGCTTCTGGACATAATAAGTAGGGTGGAAGAGAGCGAGACTACCTGGCCTGCGCGTGCCGTTGTTGTTCATTGTGGTTCAGTTTGTAAATCTTGGAGGGATGTTACCAAAGAAATTGCCAAGACTCCTGAACAATGTGGAAGGATCACATTTCCTATTTCGTTGAAACAGCCCGGGGCACGGGATTCTCCAATACAGTGCTTTATCAGGAGGGACAGAGAAACTTCTACATATCTATTATACATTGGCCTGGTGCCATCGGAGAACGAGACTGATAAGTTGCTACTAGCTGCCAAAAAGGTAAGAAGGGCAACAGGGACAGACTTTATTGTGTCTTTGGTTGCAGATGACTTTTCTCGCTCCAGCAACACATATGTTGGAAAACTCAGGTCTAATTTTTTGGGTACCAAGTTCACTATTTATGACAGCCAACCACCACACGGAGCTGCAATTCAACAAGATAGTGGGTCTAGTAGGAGATTTCATTCGAAGCAGGCATCTCCTAGAGTTTCAGCATTTAACTATGTTGTTGGCACCATTGCCTATGAGTTGAATGTTCTCCGTGCAAGAGGGCCAAGGAGAATGCATTGTACCATGAACTCCATACCTGTCTCAGCTATTCAGGAAGGGGGCACTGCTCCAACACCTACGTCTTTCCCTCAAATCGTTGACAAGCCTTTTTCTCCCTCACCAGCTCTAAAAGGAAAAGGTCCAAGTACAGATTTAAATAATGTAAACCTCCCTAAGCTACCAGTATCTAGTCAAGGGTCAGCTGAGCCCATGGTACTAAAAAATAAGGCTCCTAGATGGCACGAGCAACTGCAATGCTGGTGCCTAAACTTCAAGGGTCGTGTTACAGTGGCTTCTGTTAAAAACTTTCAACTTGTGGCCGCTGTTGATCCATCTCATAATGTTTCAGCTGCAGAACAAGAAAAAGTAATCTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACTATGGATTACCGTTATCCGCTCTCTGCCTTCCAAGCCTTTGCCATATGTCTGAGCAGCTTTGACACCAAACCAGCTTGTGAATGA 1209 0.4516 MRDGIGNMSKRGVESRRWNGRTKSHVAPDITLTSLEPIQQGQWAHLPPELLLDIISRVEESETTWPARAVVVHCGSVCKSWRDVTKEIAKTPEQCGRITFPISLKQPGARDSPIQCFIRRDRETSTYLLYIGLVPSENETDKLLLAAKKVRRATGTDFIVSLVADDFSRSSNTYVGKLRSNFLGTKFTIYDSQPPHGAAIQQDSGSSRRFHSKQASPRVSAFNYVVGTIAYELNVLRARGPRRMHCTMNSIPVSAIQEGGTAPTPTSFPQIVDKPFSPSPALKGKGPSTDLNNVNLPKLPVSSQGSAEPMVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02963 402 MobiDBLite consensus disorder prediction 274 295 - -
Vimu7g02963 402 Gene3D Tubby Protein; Chain A 102 402 IPR025659 -
Vimu7g02963 402 Pfam Tub family 104 397 IPR000007 -
Vimu7g02963 402 Gene3D - 36 92 - -
Vimu7g02963 402 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g02963 402 CDD F-box_AtTLP-like 43 87 - -
Vimu7g02963 402 PANTHER TUBBY-RELATED 38 400 - -
Vimu7g02963 402 ProSitePatterns Tub family signature 2. 387 402 IPR018066 -
Vimu7g02963 402 Pfam F-box domain 43 88 IPR001810 GO:0005515
Vimu7g02963 402 ProSitePatterns Tub family signature 1. 330 343 IPR018066 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 174 198 IPR000007 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 359 378 IPR000007 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 223 250 IPR000007 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 330 346 IPR000007 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 158 174 IPR000007 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 312 329 IPR000007 -
Vimu7g02963 402 PRINTS Tubby superfamily signature 380 402 IPR000007 -
Vimu7g02963 402 SUPERFAMILY F-box domain 37 86 IPR036047 GO:0005515
Vimu7g02963 402 SUPERFAMILY Tubby C-terminal domain-like 92 402 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02963 Vimu-Chr7 24990536 24992294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02963 1 402 TUB Transcription Factor Family AT2G18280 63.275 3.16e-179 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu7g02963 Tub 1e-105 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02963 K19600 - gmx:100778290 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02963 7 24990536 24992294 Vimu7g02963 7 24990536 24992294 ECH
Vimu7g02963 7 24990536 24992294 Vimu7g02963 7 24990536 24992294 PCT