Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02962 ATGGACATCGGTGAAGGGGAGGCCTTACTAAATCCCCGCTCCTTTAAGGTGCATGGTAAAATGTGCACAGAACTTGCAAAATTAGTGGATAGAATCTCAAGAATAGTTCCAGACATAGAGGCGGCACGGCCAGGGTTCTCATCAGGAATAGAGTCTCTGTGTTTGCTGAACAACACAATTGAAAAAGCCAAAGTACTAGTGCAGCATTGCTCTGAATGCAGCAAACTCTACCTGGTTATGACAGGGGATACAGTACTCTCAAGATGCCTAAAGACAACACGATTATTAGAGAAAAGCTTAATCCAAATTCAGAACATGGTTCCTGTTATGTTGGCAGTGAAGGTTTCTAGAATAATTCATGATCTTGAGTGTACGAGATTTGTTCTGGACCCCGATGAAGAAGAGGCTGGGAGGGTTGTGAAAGAGTTGCTCACTTCTACTTCAGATTCAGTCGATGATTCCGAAGTTAAAGCTCTTCAGTCTGTGGCATCGCGACTGAAAATAACATCAGCGAGGGCCATCGTAACAGAGCAACGATCTATTAGGAAGTTGTTGGATAAACTTGGACCAAATGAGCTGACAAAGAAAAAGATACTGAAATATCTTCTGCTTCTACTGAAAAAGCATGCAAAGCTCCTGGTGGAAGAACACGATGAGAGGGTCTATTCTTCCGAAGAACATGTTGCAACGGAGAACTCTTATCACGATTCTCTACGAAATCATCATGTGGAGTCAGACCAAAGCTTAAACTATGATCAGTATATAACTCACACCAGTGAGTTAGGTGGAGTTGACCTCCCTGAGCAATATAAATGCCCAATATCCTCAAGGTTGATGAATGATCCTGTTATCATTGAATCAGGAGTAACATATGAAAGGAAGTGGATAAAAAAGTGGTTTGATGAGGGTAATGATATATGCCCCAAAACCAGAAAGAAACTAATCCATACGGCTTTAACTCCAAATGTGGCCATGAAGGACTTAATATCAAAGTGGTGCAGAAAAAATGGAGTCTCCATTCCAGATCCTAGTAGGCAAGCAGAAGATATTTCCTCATGGGAAGCTTCAAGCACTTCCATTAATAGTATAGGAAGTTATTTCAATGATTTCAACCCGCCAGTGGATCTTAGTAACATGTCAATTGGGTCACTTGATGCTAGTTTTAGTTCAGATGCCTCGCATGGTAGGACCACTCGTGGCTCTATGCTGATCAGGAGCAGTGACAATTCTGAAAGACATCAAGTTCATGTAGAGATACATGATACTGATTTCATGCTCTTGCCTCAACTCGGTGATCTTCAATGGGATTCTCAATGCAAGGTCATTCAAGACCTGAAAGATCACTTGAAAAGGAATAGCCAAGCTTTTGTTTCTGTATCTGCAGACAATTTGGTTGAACCACTCCTCAGATTTCTGAAAAATGCATATGATCTGCGTGATGTTCAAGCGTTGAGAGCTGGAACTCAACTTCTGTTGGAAAATGGTAATACTAACTGGAATGAAGAGACGTTCATTATGTTAGCAAGTTTTCTTGATTCAGAAGCCTCAGAAGAAATTCTTGCCATACTGGAAGAACTGTCAGGACGTTGGTATAATGCACCTAAAATTGCAGCATCCAGTGCTCTCAATTCTATTTTAAACATACTTGATTTCGAAAAAAAAGGTTTCCAACAACAAGCTATTAGAATAATGTACAATTTGTCTTTCATTGGCGAAGTATGTCCCCGCATGCTATCACTCAAGTGCATCCCAAAATTGCTGCCATTTTTCGAAGACAGAAACCTTTTGAGATACTGCATACGTATACTGAAAAATCTTTGTGATACTGAAGAGGGTAGGAATTCTGTTGCTGAAACAAAGGGGTGCGTAAGTTCGGTTACTGAAATACTTAATACCGGCAATAATGAAGAACAAGAACACGCACTGGCAGTTCTAGTCTCTCTATGCTCTCATGTGGATTACTTGAAGTTAGTAATGAGTGAGCATGACAATATCATACCTTCTCTTTTCTTGATCTCCCAGAATGGAAACGATAAAGGAAAGAAAAGTGCGTTGGAATTGATCCATCTTTTGGATGATGTCAACATTGGTGACAACAAAGGTTGCCCTGAGCCAAATATCAGCAACTCTTGTCGAGATTCTAACACTCACCCACCTGAAGAAAATACACCAAAGAAATCCACGTTTCTGAAGAAACTATCACCATTCTCAAAGTCCAGTTCACATGGATCAAAATCCAAAAGATGA 2247 0.4045 MDIGEGEALLNPRSFKVHGKMCTELAKLVDRISRIVPDIEAARPGFSSGIESLCLLNNTIEKAKVLVQHCSECSKLYLVMTGDTVLSRCLKTTRLLEKSLIQIQNMVPVMLAVKVSRIIHDLECTRFVLDPDEEEAGRVVKELLTSTSDSVDDSEVKALQSVASRLKITSARAIVTEQRSIRKLLDKLGPNELTKKKILKYLLLLLKKHAKLLVEEHDERVYSSEEHVATENSYHDSLRNHHVESDQSLNYDQYITHTSELGGVDLPEQYKCPISSRLMNDPVIIESGVTYERKWIKKWFDEGNDICPKTRKKLIHTALTPNVAMKDLISKWCRKNGVSIPDPSRQAEDISSWEASSTSINSIGSYFNDFNPPVDLSNMSIGSLDASFSSDASHGRTTRGSMLIRSSDNSERHQVHVEIHDTDFMLLPQLGDLQWDSQCKVIQDLKDHLKRNSQAFVSVSADNLVEPLLRFLKNAYDLRDVQALRAGTQLLLENGNTNWNEETFIMLASFLDSEASEEILAILEELSGRWYNAPKIAASSALNSILNILDFEKKGFQQQAIRIMYNLSFIGEVCPRMLSLKCIPKLLPFFEDRNLLRYCIRILKNLCDTEEGRNSVAETKGCVSSVTEILNTGNNEEQEHALAVLVSLCSHVDYLKLVMSEHDNIIPSLFLISQNGNDKGKKSALELIHLLDDVNIGDNKGCPEPNISNSCRDSNTHPPEENTPKKSTFLKKLSPFSKSSSHGSKSKR 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02962 748 SMART Ubox_2 269 332 IPR003613 GO:0004842|GO:0016567
Vimu7g02962 748 ProSiteProfiles U-box domain profile. 265 339 IPR003613 GO:0004842|GO:0016567
Vimu7g02962 748 SUPERFAMILY ARM repeat 426 691 IPR016024 -
Vimu7g02962 748 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 340 IPR013083 -
Vimu7g02962 748 MobiDBLite consensus disorder prediction 388 408 - -
Vimu7g02962 748 MobiDBLite consensus disorder prediction 705 748 - -
Vimu7g02962 748 PANTHER U BOX DOMAIN-CONTAINING 20 699 - -
Vimu7g02962 748 SUPERFAMILY RING/U-box 257 343 - -
Vimu7g02962 748 MobiDBLite consensus disorder prediction 388 409 - -
Vimu7g02962 748 Pfam U-box domain 267 336 IPR003613 GO:0004842|GO:0016567
Vimu7g02962 748 CDD RING-Ubox_PUB 267 319 IPR045210 -
Vimu7g02962 748 Gene3D - 426 700 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02962 Vimu-Chr7 24984991 24988455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02962 12 695 U-box Gene Family AT4G36550 38.604 8.42e-138 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02962 - - gmx:100775550 1089.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02962 7 24984991 24988455 Vimu7g02962 7 24984991 24988455 ECH
Vimu7g02962 7 24984991 24988455 Vimu7g02962 7 24984991 24988455 PCT