Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02957 ATGGAAACCAACAGAAAGCAAAGTCTGATGGAAATGGGAGGCCAAGATAAGGAAATAGAGATACCAACAAGTTTAGGTTACAACCTTCCCAACAGAGATTCTTCTTCTTCCTCTTCCAAGCTCTCTTCTCCAACACTTGGTGAAAGAAGTACTACCACTCATCATGATCAACTTCATCATCAACCACCTCATCAAACTCACACATTAATCTTCAACGACCCACCTCACCATAATCTCTACCCACCACCACCTCCTCCTCCTCTTGCACCTCGTCAACCTCATACACTCACACCAGATCCAGATCTAACCACCCCAATTCCTCCCACATCGAATCCTCTAACAACACCACACCCCCACATAACAACACTACCACCACCACCACCACCAGCAACAACCTCAACCCCGTCGATCAGGTACCGAGAATGTCTTCGGAACCATGCCGCAAGCATGGGGAGCCACGTGGTCGATGGCTGTGGAGAGTTCATGGCAAGTGGCGAAGAAGGTACGCCGGAATCACTTAGATGCGCCGCGTGTGAGTGTCACCGCAACTTCCACAGGAAAGAGGTTGACGGAGAGTTACAGCCACAACAACCACCGCCACTGTCACTGGTACAGCAACAGCAACAACAACATGTTCCCAATTATCACAGCTACTACCCGAACAAGCACAATGGGCACCTTCACTACCCTACTCCCTCTCCTTCTTCCCTCCTCCATCATCACAGATTGGTTGGTAGCAGTGGTACACCGAGTTTGGTTCCCCCAGTGATGATGGCCTTTGGAGGCCCAGCTGAGTCCTCGAGTGAAGATCTCAACATGTTTCAGTCCAACACCGGAGGGGCTCAGTTATCAGTGCAGGCGCCACTTTCTTCCAAGAAGAGGTTTAGGACTAAATTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGAAAAGATTGGTTGGAAGATTCAGAAACATAATGAACAGGAGGTACAGCAGTTTTGTTCTCAAGCAGGCGTAAAGAGACAAGTTTTCAAGGTTTGGATGCACAATAACAAGAAGCACCCAATGTAA 1059 0.4863 METNRKQSLMEMGGQDKEIEIPTSLGYNLPNRDSSSSSSKLSSPTLGERSTTTHHDQLHHQPPHQTHTLIFNDPPHHNLYPPPPPPPLAPRQPHTLTPDPDLTTPIPPTSNPLTTPHPHITTLPPPPPPATTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVDGELQPQQPPPLSLVQQQQQQHVPNYHSYYPNKHNGHLHYPTPSPSSLLHHHRLVGSSGTPSLVPPVMMAFGGPAESSSEDLNMFQSNTGGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFAEKIGWKIQKHNEQEVQQFCSQAGVKRQVFKVWMHNNKKHPM 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02957 352 NCBIfam homeobox domain, ZF-HD class 292 349 IPR006455 -
Vimu7g02957 352 Pfam ZF-HD protein dimerisation region 137 189 IPR006456 -
Vimu7g02957 352 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 138 189 IPR006456 -
Vimu7g02957 352 Gene3D - 280 351 - -
Vimu7g02957 352 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 125 349 - -
Vimu7g02957 352 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 139 188 IPR006456 -
Vimu7g02957 352 MobiDBLite consensus disorder prediction 1 135 - -
Vimu7g02957 352 SUPERFAMILY Homeodomain-like 281 348 IPR009057 -
Vimu7g02957 352 MobiDBLite consensus disorder prediction 27 51 - -
Vimu7g02957 352 MobiDBLite consensus disorder prediction 76 133 - -
Vimu7g02957 352 FunFam Zinc-finger homeodomain protein 2 280 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02957 Vimu-Chr7 24899688 24903672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02957 76 349 ZF-HD Transcription Factor Family AT2G18350 43.728 1.17e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vimu7g02957 ZF-HD_dimer 1.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02957 - - vra:106776405 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02957 7 24899688 24903672 Vimu7g02957 7 24899688 24903672 ECH
Vimu7g02957 7 24899688 24903672 Vimu7g02957 7 24899688 24903672 PCT