Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02954 ATGGGACCCTGTACATGTGGCATTTCCCACGGCCAAACCACCTCCTTCTCAATGCCCTTCTCCGGCCCAAACCACAAACCTCCCTACCAAGATTCCGACATTTACGATTATTCCTTCACCTCCGCCTCTTCTTCTTCCTCTTCCGTTGACTGCACCCTTTCCCTCGCTACCCCATCCACCCGTTTCTCCCAAGACGACCAAAAACCTACTCGCCACGAACGTAGATCCGTTTCTAACTTCTGTTGGGACTTACTACAATCCAAACACAACCCTCAATCCCAAACCAAATCCTCCAGAACCTCCAATACCACCTCAAACACCGACCCTCTCGTCGCTCGCCGCTGCGCTAATTGTGACACCACCTCAACTCCCCTTTGGAGAAATGGCCCCCGAGGCCCCAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAGGAAAGAAGGGCGAGTGCCGCGGCCGCACCGCCGCAGCAGGCTTCTGGCGGCATGATGGAATCGTCGCAGGTGTACAACAACTCGTGGTATGCACACCCGCAGAGTCAGAAAATGCAGTGCTTCTCGCCGGGGATGGGGAGCGAGTTCCGTTTCGCGGATGACATCGATCGAGACGCCGATAGCGGCATTCCGTTTCTCTCGTGGAGACTCAACGTGGCAGACAGAACGAGCCTCGTCCACGACTTCACAAGATGA 696 0.5503 MGPCTCGISHGQTTSFSMPFSGPNHKPPYQDSDIYDYSFTSASSSSSSVDCTLSLATPSTRFSQDDQKPTRHERRSVSNFCWDLLQSKHNPQSQTKSSRTSNTTSNTDPLVARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAAAPPQQASGGMMESSQVYNNSWYAHPQSQKMQCFSPGMGSEFRFADDIDRDADSGIPFLSWRLNVADRTSLVHDFTR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02954 231 Gene3D - 111 173 IPR013088 GO:0006355|GO:0008270
Vimu7g02954 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 112 151 - -
Vimu7g02954 231 CDD ZnF_GATA 114 146 IPR000679 GO:0006355|GO:0043565
Vimu7g02954 231 Pfam GATA zinc finger 115 149 IPR000679 GO:0006355|GO:0043565
Vimu7g02954 231 ProSitePatterns GATA-type zinc finger domain. 115 140 IPR000679 GO:0006355|GO:0043565
Vimu7g02954 231 ProSiteProfiles GATA-type zinc finger domain profile. 109 145 IPR000679 GO:0006355|GO:0043565
Vimu7g02954 231 PANTHER GATA TRANSCRIPTION FACTOR 18 2 231 IPR044272 GO:0003700|GO:0009908
Vimu7g02954 231 MobiDBLite consensus disorder prediction 88 108 - -
Vimu7g02954 231 SMART GATA_3 109 161 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02954 Vimu-Chr7 24866652 24867550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02954 15 231 C2C2-Gata Transcription Factor Family AT3G50870 45.113 6.20e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu7g02954 GATA 5.4e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02954 - - gmx:100790571 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02954 7 24866652 24867550 Vimu7g02954 7 24866652 24867550 ECH
Vimu7g02954 7 24866652 24867550 Vimu7g02954 7 24866652 24867550 PCT