Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02941 ATGGAAGAGGAGGCTACGAACCACCAAAATGTGGCCAACCACAGCACGCGTCACCTCTTTTCACGGAATTTGGGAACCCAAACACCGCTGAATCTTGAGTCTTCCCTTTCGTATCTCTGGTTTTGCTCCTCCATTTCTTCACCGTTTTCTCTGCCAGGGTTTGAAATGGAGACGAAGGACAAAATGAATAATGAAGAACTTGCTGTGGAGTCTCCAACTTCGGTTCTCGAAGATGAGGATGTTTGTGCCCCCAAAGATGAAGTTCAGTTGGAGGAAGAGTTAATTGCTAATGTCATAAACGATGGGTCGTCTCTTGTATCGAAAACGATGGCGGAGGAGGAAGCGAAGTTACTTAATGCTAGGATAAAGGAAGAGGAGGTGCAGTGCGAGGAGGCACCTGACCTCAACGACACACAGTTTAACAAATTGGATGAGCTTTTGACTCAGACCAAGCTGTACTCCGAATTTTTGCTAGAGAAAATGGATGACATCACACTTAATGTGGGTGAACAAGTGAAAATGGAAGAGCAAGAGAGCAATCCTTCTGCAAAGAGGGGTAGGGGATCGAAAAGAAAAGCTGCTTCCCAGTGCAATACTAGGAGGGCCAAAAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAGGTGAGGGGACTGTAGATATGAAAATGACTGAGGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTGACAGGGGGAAAATTGAAGCCTTATCAACTCAAGGGTGTAAAGTGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGAATTCTTGCTGATCAAATGGGTCTTGGAAAGACAATCCAAACTATTGGATTTCTCTCACATCTAAAAGCGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTTTCAAACTGGGTGAACGAGATTTCTAGGTTTGCACCATCACTTCGGACAATTATCTACCATGGTGACAAGAAGGAGAGAGATGAGATCCGAAGGAAGTTCATGCCTAGAACAATTGGCCCAAAATTTCCCATAGTCTTAACTTCTTACGAGGTTGCATTAAATGATGCCAAGAAATATTTGAGGCCATACAGTTGGAAATATCTCGTTATTGATGAGGGACATAGGCTCAAAAATTCACAATGCAAATTAGTAAAGGCATTGAAATACTTAACTGTTGAAAACAAGCTTCTTCTAACTGGAACTCCACTTCAGAACAACTTGGCCGAACTATGGTCTCTATTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAGTTCGAGTCATGGTTTAATTTGTCAGCAAAGGGCAATAATGAAGCAAATAAGGAAGAGCTAGAAGAAAAAAGAAGATCCCAAGTAGTAGCAAAGCTCCATGCTATTCTTCGACCCTTTCTTCTGCGACGCCCTCTTCCTGCAAGTGCGCTTCGTAATTTGGCTATTCAGCTTAGGAAAGTGTGTAACCATCCCGATCTTATAGATCCAGATTGTGATCATACATATTTATATCCTCCTGTAAATGAAATAGTTGAACAGTGTGGAAAATTCCATTTGCTTGATCGATTGGTGCAACGTTTATTTGCAAGGAATCACAAAGTTCTTGTCTTCAGTCAGTGGACTAAAGTGTTGGATATAATAGATTATTATTTTAGTGAAAAAGGCTTTGAAGTTTGCAGGATTGATGGTTCTGTGAAACTGGATGATAGGAAACGACAGATCCATGACTTCAACGATGAAAATAGCAATTGCAGAGTTTTTCTTCTTTCTACTAGGGCTGGTGGATTGGGAATCAACCTTACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGGTGGATTTGCAGGCCATGGATAGGTGTCATAGAATTGGTCAAACAAAGCCTGTTCATATCTACCGGCTGTCAACTGCTCAATCCATAGAGGATCGCATGTTGAAAAGGGCTTTCAGCAAATTGAAGCTTGAGCATGTGGTGATTGGGAAAGGACAGTTTCATCAAGAGCGTAAAGCTGTCAATACTGATCAGATGGAGGAAGAGGATGTTTTGGCATTGCTTCGTGACGATGAAACAGATGAAGATAAAATGATACGAACAGATATTAGTGATGAAGACCTGGAGAAGCTCATGGATCGCAGTGATCTTATCGTCAACAACTCAGACGACTCTCCATGCAGTTCCTTTCCTCTTAAAGGTCCAGGGTGGGAGGTGGTGATTCCAACTGCTACTGGAGGTGTACTCTCTACTCTCAACAGCTAG 2289 0.4233 MEEEATNHQNVANHSTRHLFSRNLGTQTPLNLESSLSYLWFCSSISSPFSLPGFEMETKDKMNNEELAVESPTSVLEDEDVCAPKDEVQLEEELIANVINDGSSLVSKTMAEEEAKLLNARIKEEEVQCEEAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLNVGEQVKMEEQESNPSAKRGRGSKRKAASQCNTRRAKRAVAAMLTRSKEGEGTVDMKMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKAKGLDGPYMIIAPLSTLSNWVNEISRFAPSLRTIIYHGDKKERDEIRRKFMPRTIGPKFPIVLTSYEVALNDAKKYLRPYSWKYLVIDEGHRLKNSQCKLVKALKYLTVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSAKGNNEANKEELEEKRRSQVVAKLHAILRPFLLRRPLPASALRNLAIQLRKVCNHPDLIDPDCDHTYLYPPVNEIVEQCGKFHLLDRLVQRLFARNHKVLVFSQWTKVLDIIDYYFSEKGFEVCRIDGSVKLDDRKRQIHDFNDENSNCRVFLLSTRAGGLGINLTAADTCILYDSDWNPQVDLQAMDRCHRIGQTKPVHIYRLSTAQSIEDRMLKRAFSKLKLEHVVIGKGQFHQERKAVNTDQMEEEDVLALLRDDETDEDKMIRTDISDEDLEKLMDRSDLIVNNSDDSPCSSFPLKGPGWEVVIPTATGGVLSTLNS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02941 762 SMART helicmild6 551 635 IPR001650 -
Vimu7g02941 762 Coils Coil 108 130 - -
Vimu7g02941 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 476 IPR027417 -
Vimu7g02941 762 Pfam Helicase conserved C-terminal domain 528 635 IPR001650 -
Vimu7g02941 762 Pfam SNF2-related domain 249 476 IPR000330 GO:0005524|GO:0140658
Vimu7g02941 762 Gene3D - 478 732 IPR027417 -
Vimu7g02941 762 CDD SF2_C_SNF 511 645 - -
Vimu7g02941 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 525 693 IPR001650 -
Vimu7g02941 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 370 677 IPR027417 -
Vimu7g02941 762 SMART ultradead3 242 437 IPR014001 -
Vimu7g02941 762 MobiDBLite consensus disorder prediction 172 198 - -
Vimu7g02941 762 FunFam ATP-dependent DNA helicase DDM1 240 480 - -
Vimu7g02941 762 PANTHER SNF2/RAD54 HELICASE FAMILY 83 476 - -
Vimu7g02941 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 258 426 IPR014001 -
Vimu7g02941 762 Gene3D - 240 476 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02941 Vimu-Chr7 24757661 24764256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02941 232 684 RAD5 or RAD16-like Gene Family AT3G16600 24.361 6.65e-33 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu7g02941 SNF2_N 4.1e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02941 K19001 - gmx:100817842 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02941 7 24757661 24764256 Vimu7g02941 7 24757661 24764256 ECH