Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02939 ATGGGGGACTTCAACAGCAACAACAATGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCTCGCACCAAAGCCCAAAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACCTGCTGAAGCTCTTCGAGCCTAGGCCTCCCTTGGAGTACAAACCGCCGCCGGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGAACAAATTTGCTGAGCCTGGGGATCCAGAATACGCTCCACCTGTTCCAGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCTCATAATGATCCAAATGTGTCTGGAGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTACAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTCGTTGATGTTGAGCGCGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAAGTTAATCAACGGCATTCTGGGAGGGAAAATGACTTGATTTCAATTTTCAGGGAGCAACAACAGTCTCGTTCTGAAGAACCAAGAGCACGAGAGGACCGGCATGGTGATAGGGACAGGGAAGTATCACGTGAAAAAGGTAGGGATAGAGATAGAGATCGGGAGCGATCGAGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGACATCACAGAGACAGAGACAGGACAAGAGACAGGGATAGGGAAAGAGACAGAGATCGTGGACGTGATCGAGATAGGGCACGAGATCGTGATAGGGATAGGGACCGTGATCGACACCGTGAAAGGGATAGAGATTATGATGTTGGAGACACTGATCGACGTTCACGTGATAGGGAGTCTGAATATGATCGTGTGGAATCTAAACATGAGAGGGACCAACATGGAGAAAGGAACCGTGACTATGAGCCTGAGGATGATCGTGGTAGGCATAGCTATGAGCATGGACGTCGACATGCTGACCCTGATCATGACCCTGAGCAGTATGACCACTACCATGGAGATGACCGTGGTGATCATTATAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGTAGGGCGAGCAACATCTGAATCACATGAAAAGGAGAAAATTCATGGTACAGACCGTGAATATCGTCGCTCGGAGAGATCTCATTCCCGGGAGTATGATTACTAG 1455 0.4784 MGDFNSNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVNKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGRENDLISIFREQQQSRSEEPRAREDRHGDRDREVSREKGRDRDRDRERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYDVGDTDRRSRDRESEYDRVESKHERDQHGERNRDYEPEDDRGRHSYEHGRRHADPDHDPEQYDHYHGDDRGDHYNQYHDHDRMEDDYHVGRATSESHEKEKIHGTDREYRRSERSHSREYDY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02939 484 CDD RRM_snRNP70 141 231 IPR034143 GO:0030619
Vimu7g02939 484 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 63 335 - -
Vimu7g02939 484 MobiDBLite consensus disorder prediction 265 484 - -
Vimu7g02939 484 FunFam U1 small nuclear ribonucleoprotein 70 kDa 129 254 - -
Vimu7g02939 484 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723
Vimu7g02939 484 SMART rrm1_1 143 216 IPR000504 GO:0003723
Vimu7g02939 484 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 144 213 IPR000504 GO:0003723
Vimu7g02939 484 SUPERFAMILY RNA-binding domain, RBD 130 242 IPR035979 GO:0003676
Vimu7g02939 484 MobiDBLite consensus disorder prediction 225 484 - -
Vimu7g02939 484 MobiDBLite consensus disorder prediction 86 106 - -
Vimu7g02939 484 Gene3D - 129 254 IPR012677 -
Vimu7g02939 484 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 45 133 IPR022023 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02939 144 190 C2H2 Transcription Factor Family AT2G19380 42.553 2.63e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02939 K11093 - gmx:100814484 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02939 7 24742082 24747861 Vimu7g02939 7 24742082 24747861 ECH