Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02938 ATGTCTTCCTCTCCTGACAACAGTTCTCCAGATAATGCAACACCTGATGATTCCACGCCAGACGACAGCACCCCTGACGACGCTGACAACTCATCTTCACCACCATCAAATTCATCACCGCCACCATCACCACCGCCACCATTATCACCGCCACCATCATCACCGCCACCATCATCACCGCCACCATCATCACCGCCACCTTCATCGCCACCTCCATCTCCACCACAATCATCTTCATCTCCATCTCCGCCAACCCCATCAGAAAAGTCCTCTCCTTCCCCTCCAACATCAACCAATCAAAGCCCGCCATCACCCAATACTTCCCCACAGACACCTTCTCCACCCGCTTCATCACACTCTCCTCCCTCCTTTAAATCACCCACTCCTCCACACAAATCATTGCAACCTGCTTCAAAAAACAGTGGCAGTGACAGTGGCGGTAGTGGTAAACATGGAAACAGCGATAGCAGTGATCGTGGCAGCCACGATAACAGTAAAGCCATAGTTGGAGCAGTGCTTGGGGTGGGGAGCGTGCTCCTTGTTTTGGTCATCGTCTGCGTTATCTGTTCCAGGAAGAAGAAAAAGAAGAGAATGTACTATTACGGAGAGCAATCATTCGGGAAAGGGAATAACAACTATTACAATAGTGGGCAACACCAGGGTTATTATGGAGGTCCACACGGGGACCATGTTGTGAGGGTGCAAAACGGAATGGTTCCCGGTGGTGGTGGCGGCGGTGGTGGGGGTGGGGGTGGTGGCGGTGGCGGAGGTGGGTGGGGTGCACCACCTCCTCCTATGATGCATAGCGCTGATATGAGCTCCAACTACTCGACGGGACCACCCCCTTTGCCTCCTCCCTCACCAAACCTTGCTCTAGGCCTCAAAGGTGGCACCTTTACATATGAGGAACTATCTGCTGCCACCAATGGATTCGCTGATTCAAAACTGATAGGACAGGGTGGCTTCGGTTATGTCCACATGGGTGTGTTACCTAACGGAAAGGAAGTGGCAGTTAAGAGTCTAAAAGCAGGAAGTGGACAGGGAGAACGGGAGTTCCAAGCTGAGATTGACATCATCAGTCGTGTCCATCATCGCCATCTTGTGTCACTCGTTGGATACTCTATTTCTGGTGGCCAGAGAATGTTGGTCTACGAATTTATTCCCAATAAAACCTTGGAATATCACCTTCATGGAAAGGGAAGGCCTACAATGGATTGGCCTACCAGAATGCGAATTGCAATAGGATCAGCCAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTCGTATAATCCATCGTGATATTAAAGCTGCGAATGTCCTCATTGATGATAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACCACCGATAATAATACTCATGTATCAACTCGAGTCATGGGAACTTTCGGGTACCTAGCCCCAGAATATGCATCAAGTGGAAAATTGACTGAGAAGTCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAGGCGACCTGTGGATCACACAAGTGCCATGGACGACAGCTTAGTAGATTGGGCTCGACCACTACTGACTCGTGGATTGGAAGAGGATGGCAACTTTGGAGAGTTGGTTGATCCATTCTTGGAGGGAAACTACAATCCTCAAGAATTGGCTAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGACATTCTTCCAAGAAACGTCCAAAAATGAGCCAGATTGTAAGGATATTGGAAGGAGATGTGTCACTGGATGATTTGAAAGATGGGATGAAGGCAGGGCAGAGTACTGTTTTCAATTCTTCATCTGGGTCAGATCAGTATGATACAATGCAGTACAATGCAGACATGGAAAAGTTTAGAAAGGCAGTGTTCTCTAGCCAGGATTTTGGCATGAGCAGTGGTGGCTCTAGTAGTGAAGTGAGCCAGAAACAACGGCTTTAG 1962 0.4878 MSSSPDNSSPDNATPDDSTPDDSTPDDADNSSSPPSNSSPPPSPPPPLSPPPSSPPPSSPPPSSPPPSSPPPSPPQSSSSPSPPTPSEKSSPSPPTSTNQSPPSPNTSPQTPSPPASSHSPPSFKSPTPPHKSLQPASKNSGSDSGGSGKHGNSDSSDRGSHDNSKAIVGAVLGVGSVLLVLVIVCVICSRKKKKKRMYYYGEQSFGKGNNNYYNSGQHQGYYGGPHGDHVVRVQNGMVPGGGGGGGGGGGGGGGGGGWGAPPPPMMHSADMSSNYSTGPPPLPPPSPNLALGLKGGTFTYEELSAATNGFADSKLIGQGGFGYVHMGVLPNGKEVAVKSLKAGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNKTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDHTSAMDDSLVDWARPLLTRGLEEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSSKKRPKMSQIVRILEGDVSLDDLKDGMKAGQSTVFNSSSGSDQYDTMQYNADMEKFRKAVFSSQDFGMSSGGSSSEVSQKQRL 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02938 653 PRINTS Proline rich extensin signature 13 25 - -
Vimu7g02938 653 PRINTS Proline rich extensin signature 56 72 - -
Vimu7g02938 653 PRINTS Proline rich extensin signature 73 90 - -
Vimu7g02938 653 PRINTS Proline rich extensin signature 35 56 - -
Vimu7g02938 653 Gene3D Transferase(Phosphotransferase) domain 1 387 599 - -
Vimu7g02938 653 SUPERFAMILY Protein kinase-like (PK-like) 290 584 IPR011009 -
Vimu7g02938 653 ProSitePatterns Protein kinases ATP-binding region signature. 317 339 IPR017441 GO:0005524
Vimu7g02938 653 MobiDBLite consensus disorder prediction 130 154 - -
Vimu7g02938 653 ProSiteProfiles Protein kinase domain profile. 311 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02938 653 Pfam Protein tyrosine and serine/threonine kinase 315 516 IPR001245 GO:0004672|GO:0006468
Vimu7g02938 653 MobiDBLite consensus disorder prediction 240 281 - -
Vimu7g02938 653 Gene3D Phosphorylase Kinase; domain 1 291 386 - -
Vimu7g02938 653 MobiDBLite consensus disorder prediction 35 129 - -
Vimu7g02938 653 FunFam Proline-rich receptor-like protein kinase PERK1 387 595 - -
Vimu7g02938 653 MobiDBLite consensus disorder prediction 1 34 - -
Vimu7g02938 653 FunFam proline-rich receptor-like protein kinase PERK1 289 386 - -
Vimu7g02938 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Vimu7g02938 653 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 174 629 IPR047117 -
Vimu7g02938 653 SMART serkin_6 311 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g02938 653 MobiDBLite consensus disorder prediction 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02938 Vimu-Chr7 24737034 24741135 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02938 166 650 Trihelix Transcription Factor Family AT1G70460 49.597 2.34e-152 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Vimu7g02938 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02938 - - gmx:100777163 797.734