Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02935 ATGTTTGCACAGGAAAAGGTTCATAGACATTGGAGGAATCTTGAGCCTGTTTTTCCAACGAATAAGAGAGTATTATCACGGAATGAGTATTTGCATGGAGGGGAAAACGTCAATAAGCTGTCTTTGAGAATTGACAATCCTTTATGTAAATTCAATGGGTTCCCTGAAGCTACACTAGAGGAGGATCAATTCAATGATGTGGACATATCAGCAGCAAAAAGTATTAGGATTCCAATCGAGGAAAAACTACCAACATATACGGCTTGGGTATATGTGGCCAGAAATGAGAAAATGGCTAAAGATCAATCGGTTATTGGAAAATTCCAGATGTACTATGACCAAAATAGAGGTGAAATGATGATATGCAGTGATAATGAGGAAGAGATACCAAATACCCAGAATGTTAAACATGAATTCACTGAGGCTGAAGACCAAATTCTGAGGATGACACTCGAGGAATATGGGTCTACTAAGGAGGTATTGGGTATCATTAACGAGATTTTTGAGACTGAAGATTCAGAAGTTCAGGAGAGGTATGAAAAACTAAAGGAAAAGAGTATGGAGAGTCTGGATCAACATTCTAAAGATTGTCATTGTAAAGGATGTCAGAGTCATCGTGAAATCTTTGACTGTGCTATCCATGGCACTGATCAACCTTTAATATATCTTAGCGAAAAACATGTCTGCTCTGAACCTGAAGTTGGTAGGAAACCATGCAGTGATCAATGTTACCTTCTGGATAAAGGAATTACACCAATGGAAGTGGATGATAAAGGAATTACACCAATGGAAGTGGACACAACATTGCCTCCTAAGGAGCCTCAAAGTTCTTGTGAGCTGAAGAGAACCTCAGATGATATAATTATCAATATTGGCAATCAGTACAGTGAACTAAGTTTGGATGCTAGTGACAATGAAAATCACACAACATCTAGTGCATCTTTGGAAAGTCTTGGTGAACATGCTTCAAAAAAATTACCAGTTTCTGGTAGCTTTGACCATTGTGAGCGGGACAAAGGAGTTATGAATGGACGAGAAGATCTTACAAAGGAGATAGAATTTAATGAGATGCCCATTTCAAAGGACGTGCAAACTGATAAGATGATAAGTGACTCGGATTGGAGACCTACAGAGAGAGATTTATATTTGAAGGGAGTAGAATTGTATGGAAAAAACAGTTGCCTCATAGCCACTACTTTACTTACTGGCATGAAGACTTGCTTGCAAGTAGCTGAGTATATGTTTGCTGGTGGAGAGTCAATGATCCATGGATCGACAACAAATTCAACCGTGGATAGAAATGAAAATATCAACGCAGAGCGCACAGGGCTTTGGTATTTTGTGCTTCCTAATAGGGGAGGGACCTGGAAATGTCATCAAGATCAAGATCACAACGGAAAAAGGGAAAACCTAGGAAGTTCAACTATACTCGAAAGTCTGCCGGTCTGCCCCCTAGATGGAGAAAAATTGCTTATGGGCAAAACATGTGCAATAAGCAATATACGCCTTGTGGATGTCATGGAATGTGTGGAAAGGAATGCTCTTGTCTTCTTAATGGAACTTGCTGTGAAAAATATTGTGGGTGTTCAAAGATATGCACAAATCGATTCAGAGGATGTCATTGTACTAAGAGTCAATGCAGAAGTCGATTATGTCCGTGCTTTGCAGCCAATCGTGAATGTGACCCAGATGTCTGTCGAAATTGTTGGGTTAGGTAATATTCTTTTGGCGAAATCAGATGTTGTAGGATGGGGAGCCTTCGCAAAGAATCCGATAAGCAAAAGTGTTTGTCTAGGAGAGTACAAGGGTGAATTAATCTCTCCTAAAGAAGCAGAAAAACGTGGAAAATTATATGATCGTGTCAACACTTCCTTCCTTTTTAACCTCAATAATGAGTGGGTTATTGATGCACATCGCCTAGGAGACAAATTAAAATTTGCGAACCATTCATCAAAACCCAACTGCTATGCAAAGGTGATGCTTGTTGGAGGAGAACATCGAGTGGGAATATATGCCAAGGAAAACATTGAAGCTGGTGATGAGATTTTTTACGACTATTGGTATGATCTAGAATGTGCACCATCTTGGGCTCTTCCACCAGAAGACAATGCTTCCAAAAAAGATGAATTAGGCATTTCTCAGAGCAAGGCAAAGAAACGTTAG 2163 0.3962 MFAQEKVHRHWRNLEPVFPTNKRVLSRNEYLHGGENVNKLSLRIDNPLCKFNGFPEATLEEDQFNDVDISAAKSIRIPIEEKLPTYTAWVYVARNEKMAKDQSVIGKFQMYYDQNRGEMMICSDNEEEIPNTQNVKHEFTEAEDQILRMTLEEYGSTKEVLGIINEIFETEDSEVQERYEKLKEKSMESLDQHSKDCHCKGCQSHREIFDCAIHGTDQPLIYLSEKHVCSEPEVGRKPCSDQCYLLDKGITPMEVDDKGITPMEVDTTLPPKEPQSSCELKRTSDDIIINIGNQYSELSLDASDNENHTTSSASLESLGEHASKKLPVSGSFDHCERDKGVMNGREDLTKEIEFNEMPISKDVQTDKMISDSDWRPTERDLYLKGVELYGKNSCLIATTLLTGMKTCLQVAEYMFAGGESMIHGSTTNSTVDRNENINAERTGLWYFVLPNRGGTWKCHQDQDHNGKRENLGSSTILESLPVCPLDGEKLLMGKTCAISNIRLVDVMECVERNALVFLMELAVKNIVGVQRYAQIDSEDVIVLRVNAEVDYVRALQPIVNVTQMSVEIVGLGNILLAKSDVVGWGAFAKNPISKSVCLGEYKGELISPKEAEKRGKLYDRVNTSFLFNLNNEWVIDAHRLGDKLKFANHSSKPNCYAKVMLVGGEHRVGIYAKENIEAGDEIFYDYWYDLECAPSWALPPEDNASKKDELGISQSKAKKR 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02935 720 MobiDBLite consensus disorder prediction 303 322 - -
Vimu7g02935 720 MobiDBLite consensus disorder prediction 698 720 - -
Vimu7g02935 720 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE E(Z) 573 707 IPR045318 GO:0006338|GO:0042054
Vimu7g02935 720 ProSiteProfiles SET domain profile. 572 687 IPR001214 GO:0005515
Vimu7g02935 720 Gene3D SET domain 562 688 IPR046341 -
Vimu7g02935 720 Pfam SET domain 583 686 IPR001214 GO:0005515
Vimu7g02935 720 MobiDBLite consensus disorder prediction 303 318 - -
Vimu7g02935 720 MobiDBLite consensus disorder prediction 702 720 - -
Vimu7g02935 720 CDD SET_EZH 574 688 - -
Vimu7g02935 720 SMART set_7 572 693 IPR001214 GO:0005515
Vimu7g02935 720 Coils Coil 165 185 - -
Vimu7g02935 720 SUPERFAMILY SET domain 575 690 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02935 Vimu-Chr7 24715200 24724268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02935 578 686 C2H2 Transcription Factor Family AT2G23740 30.159 2.71e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu7g02935 SET 5.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02935 - K11430 vra:106776653 818.535