Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02925 ATGACAAAAGTTACATCTTTGGAAACAACCAAGAGAAGAGCCAACGAGATCGAGGACTTCTGCAGCTTCTGCTTCTGCCTTTTCCTTCTTGCTGGGGTGCTGCCACCTGCTACACTCTTTCTCTCCCAAAAATCAAACCTTAATTTCTGCGATATTTGTTGGATCCAACTTCAAGAGCCGGCTACCCTTAGCTGTTTTAAGGTTCACATGCCGGTTGACTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCGACGACAAAGAAGAAGCGAAACCTCCCAGGAATGCCAGATCCGGATGCTGAGGTGATTGCTCTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGAGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAACCGACGTGCGTTCACCACGATCCTTCTAGAGCTTTGGGTGATCTCACGGGGATTAAGAAGCACTTCTGCAGAAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCAGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGTACCCGAGAGTATAAATGCGATTGTGGTACCCTCTTCTCAAGGAGGGATAGCTTCATCACGCATAGGGCTTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGCCTCAGACTGTTGCAAAGGCTAGTTCCGAGTCAGATTCGAAGGCTGTGACCGGTGATTCGTCGCCTCCCGCGGCTGCCGCTGCGGCTACGCCTCCACCGCCTTCTGCACCGCCAGCTAGTTCTAAGTCAAACAGTGTTGTCGTATCGTCGTCTGTTTTGCAGACACCAAATCCAGAGTTGCCAGAAAATTCCCCACAAGTCATAGAAGAACCGCAGGCCAATCCTGCTGTAAGTGGAAGCTGCAGCGGCACCAGTACCAGTACCAGCACTACTAGCTCGACAAGCAACAGCAATGGTGGTGCAAGCAGCAGTGTATTTGCAAGCCTGTTTGCTTCATCAACAGCATCCGCAACTGCGAGCCTCCAATCTCAAACACCAGCATTCACTGACCTAATCAGGGCCATGGGGCATCCTGATCATCCAGCAGACCTCTCACGGCCTTCAGCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCACGGGTCATCCATTTTTGGAACAGGATTGCAGGAGTGCCGTCAATATGCCCCACCGCCACAGCCAGCCATGTCTGCTACTGCTTTGCTGCAAAAAGCCGCCCAAATGGGTGCAGCTGCTACAAATGCCTCTTTTCTTCGTGGATTAGGCATAGTGTCTTCTGCGTCAACCTCATCAGGTCAGCAAGATAGTTTACAATGGGGTCAGCAGCCAGGGGAACCGGAGGGTGCCTCAGTTCCAGCAGGTCTTGGACTCGGGCTTCCCTGTGACGGCAGCTCTGGACTAAAGGAGTTAATGATGGGGACTCCCTCTGTGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTCGGGCTGGGAATGGCCGCTGGGGGCAACCCCGGTGGGGGCTTATCGGCACTCATCACCTCAATTGGTGGCAGTCTGGATGTTACTGCTGCAGCAGCAGCAGCATCCTTTGGTAATGGAGAATTCCCTGGCAAGGATATTGGGCGGAGTACTTGA 1776 0.5265 MTKVTSLETTKRRANEIEDFCSFCFCLFLLAGVLPPATLFLSQKSNLNFCDICWIQLQEPATLSCFKVHMPVDLDNVSTASGEASVSSSGNQTVPPKPTTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQPQTVAKASSESDSKAVTGDSSPPAAAAAATPPPPSAPPASSKSNSVVVSSSVLQTPNPELPENSPQVIEEPQANPAVSGSCSGTSTSTSTTSSTSNSNGGASSSVFASLFASSTASATASLQSQTPAFTDLIRAMGHPDHPADLSRPSASEPISLCLATNHGSSIFGTGLQECRQYAPPPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSASTSSGQQDSLQWGQQPGEPEGASVPAGLGLGLPCDGSSGLKELMMGTPSVFGPKQTTLDFLGLGMAAGGNPGGGLSALITSIGGSLDVTAAAAAASFGNGEFPGKDIGRST 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02925 591 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Vimu7g02925 591 SMART c2h2final6 171 201 IPR013087 -
Vimu7g02925 591 SMART c2h2final6 130 152 IPR013087 -
Vimu7g02925 591 SMART c2h2final6 206 226 IPR013087 -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 305 366 - -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 264 366 - -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 80 110 - -
Vimu7g02925 591 Gene3D Classic Zinc Finger 110 176 - -
Vimu7g02925 591 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 86 550 IPR031140 -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 482 496 - -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 482 508 - -
Vimu7g02925 591 Gene3D Classic Zinc Finger 184 264 - -
Vimu7g02925 591 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 152 IPR013087 -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 264 283 - -
Vimu7g02925 591 FunFam protein indeterminate-domain 5, chloroplastic-like 184 263 - -
Vimu7g02925 591 SUPERFAMILY beta-beta-alpha zinc fingers 129 226 IPR036236 -
Vimu7g02925 591 MobiDBLite consensus disorder prediction 80 99 - -
Vimu7g02925 591 FunFam protein indeterminate-domain 12-like 109 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02925 Vimu-Chr7 24624829 24627658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02925 70 591 IDZ Gene Family AT5G66730 60.037 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu7g02925 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02925 K25869 - gmx:100806404 796.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02925 7 24624829 24627658 Vimu7g02925 7 24624829 24627658 ECH
Vimu7g02925 7 24624829 24627658 Vimu7g02925 7 24624829 24627658 PCT