Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02915 ATGAATCATCGACCTTTCCAAGACAACATGATGTTCATCCCTCAGTTATACCCCGCCGATGCACCATACACTCAAATAATTGCTCAACAAGGGGAGAGTAAGAAGCCAAAACGCCGTCGTAGTAAGAAGAACAAAGGAGGAGAGAACGGTGCCTCCGAAGCCAACAGGAAGAGGAAGCTTAGTGCCGAGCAAGTTAATCTACTTGAGCAGAACTTTGGAAATGAGCATAAACTTGAGTCTGAGAGGAAAGACAGGCTCGCATTGGAGCTCGGTCTGGACCCTCGACAAGTTGCAGTGTGGTTTCAAAACAGAAGAGCTCGCTGGAAGAACAAAAAACTAGAAGAAGAGTACTCAAACCTTAAAAAATCCAACGAAGCCAACTTGCTCGAGAAATGTCGATTGGAAACCGAGGTATTGAAGCTGAAAGATCAACTTTCTGAGGCGGAGAAGGAGATTCAGAGGCTGTTGGAGAGTGGTGATAGAGTTCCGAGTAACAGCTCTAGCTCCTCACAGTCACAGTCACAATCACAATCTATGGAAGCGGTGGACCCACCATTCTTCGGGGTGTTCGGAGTTGATGGGTATGATGATGATGTGTTTTACGGGCCCGAGACTCACTGCATGAACGCCTTGGAATGGATTAATCTGTATATGTAA 657 0.4627 MNHRPFQDNMMFIPQLYPADAPYTQIIAQQGESKKPKRRRSKKNKGGENGASEANRKRKLSAEQVNLLEQNFGNEHKLESERKDRLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSNEANLLEKCRLETEVLKLKDQLSEAEKEIQRLLESGDRVPSNSSSSSQSQSQSQSMEAVDPPFFGVFGVDGYDDDVFYGPETHCMNALEWINLYM 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02915 218 CDD homeodomain 56 112 IPR001356 GO:0003677
Vimu7g02915 218 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Vimu7g02915 218 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Vimu7g02915 218 MobiDBLite consensus disorder prediction 45 61 - -
Vimu7g02915 218 MobiDBLite consensus disorder prediction 28 61 - -
Vimu7g02915 218 SUPERFAMILY Homeodomain-like 56 120 IPR009057 -
Vimu7g02915 218 Gene3D - 47 120 - -
Vimu7g02915 218 Coils Coil 103 130 - -
Vimu7g02915 218 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 42 176 IPR045224 GO:0003700
Vimu7g02915 218 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Vimu7g02915 218 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Vimu7g02915 218 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Vimu7g02915 218 Coils Coil 51 71 - -
Vimu7g02915 218 MobiDBLite consensus disorder prediction 156 178 - -
Vimu7g02915 218 FunFam homeobox-leucine zipper protein ATHB-40 50 119 - -
Vimu7g02915 218 MobiDBLite consensus disorder prediction 159 178 - -
Vimu7g02915 218 Coils Coil 138 158 - -
Vimu7g02915 218 SMART HOX_1 54 115 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02915 Vimu-Chr7 24564546 24566706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02915 1 218 Homeobox Transcription Factor Family AT4G36740 57.778 1.83e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu7g02915 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02915 K09338 - gmx:100809616 320.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02915 7 24564546 24566706 Vimu7g02915 7 24564546 24566706 ECH
Vimu7g02915 7 24564546 24566706 Vimu7g02915 7 24564546 24566706 PCT