Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g02894 ATGATATCTTACAATACCAAATTTAAATATTGGCATTTTGCTTTAGCTATTGTTGTTGTTGTCTTTATTCCAAACTTTGGTGTCGCAAAACAATTTAAAATAGATGGATTGAAAATGAATGTTATTGATCGATGTTGGAGATTGAATCCTGAATGGAGGATAAATCGACCTCAACTAGCAACATGTTCTATTGGTTACACTGGTAAGATGACAAACAACGTTGGTAAAAACCTCGTCCATTATAAAGTTATTGACCCTAGTGATGATCCGATAAACCCTAAACCTGGTACTTTGAGGTACGGAGCTTCTATAATTCAACGTAAAGTCTGGATCACATTCCAAAGAGACATGCATATTAAACTCGAAAGACCCCTTCTTATTAGTAGTTTTACAACCATTGATGGTCGAGGTGTTAATGTTGACATTGCTGAAAATGCATGTATAATGATCTTTAAGGCCACAAATGTAATCATCCATAACATTCGACTTCATCATTGCAAACCTCAAGCTCCAGGGGATGTGATGGGACCCGAAGGAAAGGTGATTCCTTTGGGCCATGTAGATGGAGATGCAATAAGATTGGTTACCGCTTCAAAGATTTGGATTGATCACATTACACTTTACAATTGCCAAGATGGCTTACTTGATGTAACACGGGGTTCAACTAATGTAACTATATCTAATAATTGGTTTAGAAATCAAGACAAAGTTATGCTCCTTGGACATGATGATGGTTATATAAGAGATCAAAACATGAAGGTTACCATTATATACAACCACTTTGGACCTAATTGCAATCAACGCATGCCTAGGATTCGTCATGGGTATGCACATGTAGTCAACAATTTTTACTTAGGATGGTTGCAATATGCCATTGGTGGAAGTATGAGACCTAGTCTCAAAAGTGAAGCTAATCTCTTTATAGCACCAACAAAAGGGAGTAAGGAGGTAACATGGAGAAAGAATAGCCACGCAAATGAAGATGCATGGGAGTTTTATTCAGTGAAAGACGCATTTGAGAATGGAGCTTCTTTCACAATGACAAAAGGAGGACAAGTGCCAAAACCAAACTATAGTGAAGAACAACATTTTAATATTGCTAATGTCAACTATGTGAGATTATTAACTCGTTCATCAGGTGTATTACGATGCACTAAAACATCTCTATGTTAA 1173 0.3657 MISYNTKFKYWHFALAIVVVVFIPNFGVAKQFKIDGLKMNVIDRCWRLNPEWRINRPQLATCSIGYTGKMTNNVGKNLVHYKVIDPSDDPINPKPGTLRYGASIIQRKVWITFQRDMHIKLERPLLISSFTTIDGRGVNVDIAENACIMIFKATNVIIHNIRLHHCKPQAPGDVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHITLYNCQDGLLDVTRGSTNVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTIIYNHFGPNCNQRMPRIRHGYAHVVNNFYLGWLQYAIGGSMRPSLKSEANLFIAPTKGSKEVTWRKNSHANEDAWEFYSVKDAFENGASFTMTKGGQVPKPNYSEEQHFNIANVNYVRLLTRSSGVLRCTKTSLC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g02894 390 SUPERFAMILY Pectin lyase-like 39 348 IPR011050 -
Vimu7g02894 390 Gene3D - 39 383 IPR012334 -
Vimu7g02894 390 SMART amb_all 116 313 IPR002022 -
Vimu7g02894 390 PANTHER PECTATE LYASE 18-RELATED 38 387 IPR045032 GO:0030570
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 330 354 IPR018082 -
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Vimu7g02894 390 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Vimu7g02894 390 Pfam Pectate lyase 127 307 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g02894 Vimu-Chr7 24412572 24414080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g02894 70 317 Polysaccharide Lyase AT5G09280 68.952 9.89e-139 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g02894 K01728 - gmx:100780437 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02894 7 24412572 24414080 Vimu7g02894 7 24412572 24414080 ECH